PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LOC_Os06g42420.1

Common Name

OSJNBa0081P02.17

Organism

Oryza sativa subsp. japonica

Taxonomic ID

39947

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

FAR1

Protein Properties

Length: 910aa MW: 103536 Da PI: 8.2382

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LOC_Os06g42420.1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	58.2	2.6e-18	151	230	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 fYn Y++ +GF +r+sk++++ + g +++f+C +eg++++ + + tr+gCka++++++++ ++kw+v+ +++eHnHe+ LOC_Os06g42420.1 151 FYNLYSRFTGFGIRRSKNRYK-DGGVKSMQEFCCIREGRDNSVT---------GPPTRIGCKAMVRLNRSSeSQKWRVSAFVSEHNHEMK 230 9*************99987.889999******988754.........569**********99*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.4E-12	151	229	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.5E-30	353	446	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.237	636	672	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.8E-5	637	668	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.4E-5	647	674	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 910 aa Download sequence Send to blast
MSSARSVASP SAARVGGGSS APDVEQQKSV AAVGASSPVS SSKHHHMAKA EDGTITVNGD 60 KQQNPAADRG SYQNPCWTET IFAKIAMEEE GWPEKGGEDH SGQPMDVVPL ERIVVEGEEE 120 SDLLPISLSD PAILLPKIGQ TFNEDSDGYA FYNLYSRFTG FGIRRSKNRY KDGGVKSMQE 180 FCCIREGRDN SVTGPPTRIG CKAMVRLNRS SESQKWRVSA FVSEHNHEMK RDLQHTKHFR 240 SHNFIDEGTK RNIKEMVDNG MTPTAMYGLL SGMHGGPSLT PFTRRAVTRM AYAIRRDECS 300 NDVQKTLNFF REMQCRSKNF FYTIQIDGAS RIKNIFWCHS LSRLSFDHFG DAITFDTTYQ 360 TNRYNMPFGI FVGVNNHFQT AIFGCALLRE ETIEAFKWLF QTFTDAMHGK RPAAILTDNC 420 HQMEVAIKAV WPETIHRVCK WHVLKNAKEN LGNIYSKRSS FKQEFHRVLN EPQTEAEFEK 480 AWSDLMEQYN LESSVYLRRM WDMKKKWAPD YFREFFYARM STTQRSESMN HVLKKYVKPS 540 SSLHGFAKRY ENFYNDRIEA EDAEEHDTYN EKVSTLTSSP IEKHASRVYT RGAFSRFKEQ 600 FKLSFSFMVY HTSDQHVLQL VHIGDDTLQS WGSKEFKVQV DLTEQDLSCG CKLFEHLGII 660 CSHIIRVMVQ YGFTEIPKKY ILKRWTKDAR DSIPKHLEES YLKDKEAASS RTYRNTLLHK 720 SALDMVRLGG TSSETYEKTV EVLTKLIGEL QVMCTSQVVN NKEIHCGDRT IGKKPTGVQL 780 DDSVDSSDSE HGMSDEFCVA DEDGIGQDVS AGEDSVDVDM TDVNEEDILP PEVRRSRGRP 840 RSTRLMSKGE TSSKAKKKKA SESTSKDESK NHAKGKKEST KQIRYCKQCG GHGHYKSTCG 900 RKSSYERKK*

Sequence ? help Back to Top

Protein Sequence Length: 910 aa Download sequence Send to blast

MSSARSVASP SAARVGGGSS APDVEQQKSV AAVGASSPVS SSKHHHMAKA EDGTITVNGD  60
KQQNPAADRG SYQNPCWTET IFAKIAMEEE GWPEKGGEDH SGQPMDVVPL ERIVVEGEEE  120
SDLLPISLSD PAILLPKIGQ TFNEDSDGYA FYNLYSRFTG FGIRRSKNRY KDGGVKSMQE  180
FCCIREGRDN SVTGPPTRIG CKAMVRLNRS SESQKWRVSA FVSEHNHEMK RDLQHTKHFR  240
SHNFIDEGTK RNIKEMVDNG MTPTAMYGLL SGMHGGPSLT PFTRRAVTRM AYAIRRDECS  300
NDVQKTLNFF REMQCRSKNF FYTIQIDGAS RIKNIFWCHS LSRLSFDHFG DAITFDTTYQ  360
TNRYNMPFGI FVGVNNHFQT AIFGCALLRE ETIEAFKWLF QTFTDAMHGK RPAAILTDNC  420
HQMEVAIKAV WPETIHRVCK WHVLKNAKEN LGNIYSKRSS FKQEFHRVLN EPQTEAEFEK  480
AWSDLMEQYN LESSVYLRRM WDMKKKWAPD YFREFFYARM STTQRSESMN HVLKKYVKPS  540
SSLHGFAKRY ENFYNDRIEA EDAEEHDTYN EKVSTLTSSP IEKHASRVYT RGAFSRFKEQ  600
FKLSFSFMVY HTSDQHVLQL VHIGDDTLQS WGSKEFKVQV DLTEQDLSCG CKLFEHLGII  660
CSHIIRVMVQ YGFTEIPKKY ILKRWTKDAR DSIPKHLEES YLKDKEAASS RTYRNTLLHK  720
SALDMVRLGG TSSETYEKTV EVLTKLIGEL QVMCTSQVVN NKEIHCGDRT IGKKPTGVQL  780
DDSVDSSDSE HGMSDEFCVA DEDGIGQDVS AGEDSVDVDM TDVNEEDILP PEVRRSRGRP  840
RSTRLMSKGE TSSKAKKKKA SESTSKDESK NHAKGKKEST KQIRYCKQCG GHGHYKSTCG  900
RKSSYERKK*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.12304	0.0	panicle

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	Q8H7R4

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LOC_Os06g42420.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
RiceGE	Os06g42420

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004733	0.0	AP004733.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0023I22.
GenBank	AP007205	0.0	AP007205.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0048L03.
GenBank	AP014962	0.0	AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	Q8H7R4	0.0	Q8H7R4_ORYSJ; Uncharacterized protein OSJNBa0081P02.17

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967
Representative plant	OGRP30	12	351

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-115	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	LOC_Os06g42420.1