PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os06g42140.1 | ||||||||
Common Name | Os06g0626801, OSJNBa0072A21.36, OSNPB_060626801, P0530H05.7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bZIP | ||||||||
Protein Properties | Length: 72aa MW: 7897.05 Da PI: 11.6905 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 21.5 | 5.2e-07 | 25 | 62 | 4 | 44 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44 +r++ + +NRe+A R RK+ ++ L+ v+ L eN LOC_Os06g42140.1 25 KRRAKMMLSNRESA---RMRKQRHLDDLTAQVAHLHRENVH 62 57889999******...79********************75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57959 | 1.16E-6 | 26 | 66 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 2.9E-5 | 26 | 62 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 72 aa Download sequence Send to blast |
MSAARGGGRA SSSAVEEELR ALMEKRRAKM MLSNRESARM RKQRHLDDLT AQVAHLHREN 60 VHVATALGLT T* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.21442 | 8e-53 | callus| flower| leaf| panicle| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32980910 | 8e-53 | ||||
Expression Atlas | Q67VR4 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os06g42140.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os06g42140 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003541 | 1e-117 | AP003541.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0530H05. | |||
GenBank | AP004737 | 1e-117 | AP004737.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0072A21. | |||
GenBank | AP014962 | 1e-117 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015689573.1 | 4e-28 | PREDICTED: ocs element-binding factor 1-like | ||||
TrEMBL | Q67VR4 | 1e-41 | Q67VR4_ORYSJ; Os06g0626801 protein | ||||
STRING | ORUFI06G23140.1 | 5e-39 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4459 | 33 | 67 | Representative plant | OGRP10708 | 4 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34590.1 | 6e-16 | G-box binding factor 6 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os06g42140.1 |