PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os06g40150.1 | ||||||||
Common Name | LOC4341466, Os06g0604000, OsJ_21903, OSNPB_060604000, P0486H12.41-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ERF | ||||||||
Protein Properties | Length: 244aa MW: 25396.5 Da PI: 10.0322 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.7 | 3.3e-19 | 6 | 55 | 1 | 54 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54 ++++GVr+++ +g+Wv+eIr+p +r++lg+f taeeAa+a+++a+ + LOC_Os06g40150.1 6 KKFRGVRQRH-WGSWVSEIRHP-----LlkRRVWLGTFETAEEAARAYDEAAILMS 55 59*******9.**********8.....334*********************98776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.02E-32 | 6 | 66 | No hit | No description |
PROSITE profile | PS51032 | 21.957 | 7 | 64 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.7E-33 | 7 | 65 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.5E-39 | 7 | 70 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.29E-20 | 7 | 65 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.5E-12 | 7 | 54 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-10 | 8 | 19 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-10 | 30 | 46 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MGQSKKKFRG VRQRHWGSWV SEIRHPLLKR RVWLGTFETA EEAARAYDEA AILMSGRNAK 60 TNFPVARNAT GELTPAAAVA GRDGRVGGGS GSSSSMTANG GGNSLSQILS AKLRKCCKTP 120 SPSLTCLRLD PEKSHIGVWQ KRAGARADSS WVMTVELNKD TAVSSAATVA AATAVSSSDQ 180 PTPSDSTVTT TSTSTTGSPS PPPPAMDDEE RIALQMIEEL LGRSGPGSPS HGLLHGGEGS 240 LVI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-16 | 6 | 68 | 4 | 67 | ATERF1 |
3gcc_A | 6e-16 | 6 | 68 | 4 | 67 | ATERF1 |
5wx9_A | 2e-15 | 1 | 68 | 8 | 76 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.8584 | 0.0 | callus| flower| leaf| panicle| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32971181 | 0.0 | ||||
Expression Atlas | Q69XI7 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Detected in sepals of very young closed buds. Later, expressed in sepals and petals veins and epidermis, as well as in developing gynoecium but not in stamens. At anthesis, confined to the gynoecium, commenced in the anther, and slightly expressed in the anther filament. When petals and sepals withered, strong expression at the bottom of the silique, in the abscission zone, and in the pedicel region below it. At silique maturity, detected in the same region but only at the nectaries. {ECO:0000269|PubMed:15319479}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in aerial organs, mostly in flowers, and in roots. Also observed at the branch points of pedicels of most young flowers, and in a patchy pattern in roots of mature plants and very young leaves in the rosette, including support cells of their trichomes. {ECO:0000269|PubMed:15070782, ECO:0000269|PubMed:15319479}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis (PubMed:15070782, PubMed:15319479). Confers drought resistance (PubMed:15319479). Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15070782, ECO:0000269|PubMed:15319479}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os06g40150.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os06g40150 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK061163 | 0.0 | AK061163.1 Oryza sativa Japonica Group cDNA clone:006-209-A04, full insert sequence. | |||
GenBank | FJ940222 | 0.0 | FJ940222.1 Oryza sativa Japonica Group clone KCS272E11 AP domain containing transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641433.1 | 1e-176 | ethylene-responsive transcription factor WIN1 | ||||
Swissprot | Q9XI33 | 4e-73 | WIN1_ARATH; Ethylene-responsive transcription factor WIN1 | ||||
TrEMBL | A0A0E0PZW7 | 1e-175 | A0A0E0PZW7_ORYRU; Uncharacterized protein | ||||
TrEMBL | A0A1Z3GCX9 | 1e-175 | A0A1Z3GCX9_ORYSI; Transcription factor AP2/ERF | ||||
TrEMBL | Q69XI7 | 1e-175 | Q69XI7_ORYSJ; AP domain containing transcription factor | ||||
STRING | ORUFI06G21790.1 | 1e-176 | (Oryza rufipogon) | ||||
STRING | OS06T0604000-02 | 1e-176 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3717 | 38 | 76 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G15360.1 | 2e-55 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os06g40150.1 |
Entrez Gene | 4341466 |