PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g39680.1
Common NameLOC4341437, Os06g0597800, OsJ_21871, OSNPB_060597800
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 670aa    MW: 76858.3 Da    PI: 7.7367
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g39680.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR172.68.4e-2380170289
              FAR1   2 fYneYAkevGFsvrkskskkskrnge..itkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                       fYn+YA ++GF +r+++s++++r+g    ++++fvC keg++++++ + ++k++r+r + r gC a+++v ++  +kw++tkl+leH+H +
  LOC_Os06g39680.1  80 FYNAYALRLGFGIRVARSRSERRKGVelLIMKRFVCLKEGHHKKKDAEpSDKKKRKRLSIRDGCPAMMEVVRRGPEKWVITKLVLEHTHVI 170
                       9**************999999776542389************9999987899999**********************************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-2080170IPR004330FAR1 DNA binding domain
PfamPF105511.2E-26258349IPR018289MULE transposase domain
PROSITE profilePS509669.26542574IPR007527Zinc finger, SWIM-type
PfamPF044346.6E-7544572IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0010018Biological Processfar-red light signaling pathway
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 670 aa     Download sequence    Send to blast
MEYTSSEDDE LVEGYMDVED DTGTSNTDQG TGLMPSEMRS ILPRPSSVGN GRLMAADGLG  60
TNDDPCLGME FESDGAARAF YNAYALRLGF GIRVARSRSE RRKGVELLIM KRFVCLKEGH  120
HKKKDAEPSD KKKRKRLSIR DGCPAMMEVV RRGPEKWVIT KLVLEHTHVI LSPDRVREVQ  180
LRRLSGKCAE HDNQLQELRR NVFGDTDAQG LFNYLKRMQS ENSGFFYSIQ VDSKNCVSNA  240
VWADARARMS YTYFGDAVYF DTTYSKNENM LPFAAFTGVN HHGDTVPFGC ALVLDRTESS  300
YTWLFETWLT AVGRRLPFSF TTDEGKAIAS AVAKVFPQCF HRLCRWRILS RCKKKLSDDY  360
VRFPNLHDEL RRCINECYTE VAFDMFWGTI LDKYGLRENS WLRSIFEARH RWVPAYLTTS  420
SFFAELTLTQ RGETIGRFFR NNFSTRVPLD EFTTKFDQHI DNLYVHETQK DLGSSHPEQI  480
LKTNIALEKQ ARSIYTNAVF EIFQTELFEA LQHYAVKVHQ DGPYSKYYVD RDDPPTRHTV  540
FYNVAEKKAW CDCCRYAFSA ILCRHVLGVF ILAGIMVLPE TCIAKRWTKR AKTGPELIGH  600
NLENGNCYMD SSTSRYNDLI HDAIKCAEKG AVSADNFRVA KEILRKAFME IKCLGEKLTD  660
DDLQQVDSR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121135KKKDAEPSDKKKRKR
2129136DKKKRKRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.502030.0leaf| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379897060.0
Expression AtlasQ0DB68-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g39680.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g39680
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1200830.0AK120083.1 Oryza sativa Japonica Group cDNA clone:J013014J20, full insert sequence.
GenBankAP0036230.0AP003623.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0642B07.
GenBankAP0042360.0AP004236.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0417D05.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641232.10.0protein FAR1-RELATED SEQUENCE 5
RefseqXP_025882193.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLQ0DB680.0Q0DB68_ORYSJ; Os06g0597800 protein
STRINGOS06T0597800-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-126FAR1-related sequence 5