PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g39090.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 1191aa    MW: 136208 Da    PI: 6.5243
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g39090.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR153.48.7e-1745123179
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevt 79 
                       kfY +YAk  GFsvrk++ k++  +gei++r+fvCs+eg+re ++ + t+++r++ra t +gC akl++++++ +g+ +v+
  LOC_Os06g39090.1  45 KFYVDYAKGKGFSVRKNNLKRK--DGEIIWRQFVCSCEGYRELKHFErTDRKREPRALTCCGCLAKLEIERNEeKGVHRVM 123
                       6****************99887..9*****************999876889999*****************9977777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.6E-1645123IPR004330FAR1 DNA binding domain
PfamPF105518.0E-21171254IPR018289MULE transposase domain
PfamPF105361.5E-11528758IPR019557Aminotransferase-like, plant mobile domain
SuperFamilySSF540011.81E-209491083No hitNo description
PROSITE profilePS5060011.0869781190IPR003653Ulp1 protease family, C-terminal catalytic domain
PfamPF029022.2E-59931084IPR003653Ulp1 protease family, C-terminal catalytic domain
Gene3DG3DSA:3.30.310.1301.4E-710431083No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016926Biological Processprotein desumoylation
GO:0005634Cellular Componentnucleus
GO:0004175Molecular Functionendopeptidase activity
GO:0016929Molecular FunctionSUMO-specific protease activity
Sequence ? help Back to Top
Protein Sequence    Length: 1191 aa     Download sequence    Send to blast
MDKVKGHGKN VRSDIMSSSY VSLEDQEEYK IMGTVVFSSE EEGYKFYVDY AKGKGFSVRK  60
NNLKRKDGEI IWRQFVCSCE GYRELKHFER TDRKREPRAL TCCGCLAKLE IERNEEKGVH  120
RVMSDSKKAQ AVELRMSGLR AFQIMEVMEN NYDELDEVGF VRKDLYNFFT RTYRVNKYNL  180
PFIPFIGVNH HRSTTIFGCG ILSNESVNSY CWLLETFLEA MRQVHPKSLI SDGDLAMAKA  240
ISKSMDEEEF ERRWADFKEN GGTGNGQWIA LIDVPTKGEV GSCLYRWEIL VGIDADPLEK  300
DAVRIYTAVV FKKVRAQIRL IAGLEVISGT NQDGSSLYVF GLKDDNEVWD EVRVTFRGQS  360
LEEVSTLKRK GIIRFWQQRK DFKEISKDEY FAKNNEFATW SKEEKGKFFS DLSLESARDL  420
FEKFVKTWNK GKLPSQYYEG ITRGPRWVLQ IAGEEASMKD RFVSPHRQTA NRSHAIKNTV  480
GHHDCEHAEI QPSTGTLVCS PHAMSEVILH LSPPQKKAIE VSGLGNLLKI NKIHIYRDLC  540
NEIARSYDKE KKAFNINGTF VTMTLDDVDC LLGLPSKGDE IFEAPKINKP ELFNLYKKEG  600
QTTITLEALR VAIINSSSYD DHFIRRFILF SIGSFICLTT QRYVRSGYLN LVDDVDKMRE  660
LNWSSLTLNQ LLKGILKFRE KETNIEGNVC LLQIWYWEKL RIDKLAVTIY HSGRERQLIQ  720
YWDKIKEKKR LFYLFGKGQV VDDIRGTIDC KEIPNENAHD NDSETRTNED FVCTSEEVHS  780
IISTEQSADI TLQERIQESI QTLQDNFNDF TKDFWPRMRA LILDCMENDS KCPERKDTTH  840
VFEDVEQEQI DPREHVSNHN EEYYINQNEN MTCETKDNSN QSNQSRKRLT GPTGRTYKPT  900
NRTDFIYETR GKKKDIIRTQ AQTKKTIVYI EKEDLTQQII DNGPPKNALR ELTKKEDPFI  960
TYINNTEDNK VMVHIEQVEV KWIRMKVLTQ PEFLNDDVMD AYIQCLRYKV KGIRGDGKAF  1020
LEMAIKISLL NVEGVHVEAS KPRNKRWIRD MARGYLAFDM IFLPINIKDT HWYLAVINAK  1080
RREVDGDSGG VKGAAVHGEE NVAAVAGGSD AVKRPHREPA EAGGGAATRR DSLEKGAGEE  1140
DGDGGGSQAG AETPPEEKAA RATSNGLRRR EAADSGGGGE ADVDGEVLAG *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.534360.0callus| flower
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329826300.0
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g39090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g39090
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0036170.0AP003617.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0502H06.
GenBankAP0036220.0AP003622.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0633E08.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLQ655Z10.0Q655Z1_ORYSJ; Epstein-Barr virus EBNA-1-like
STRINGORUFI06G21100.10.0(Oryza rufipogon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.26e-16FAR1-related sequence 3