PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g37450.1
Common NameLOC4341355, OsJ_21757
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GATA
Protein Properties Length: 391aa    MW: 41083.7 Da    PI: 9.8163
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g37450.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.51.6e-17203236134
              GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                       Cs C+ttkTplWR+gp g+k+LCnaCG+++rk +
  LOC_Os06g37450.1 203 CSDCNTTKTPLWRSGPCGPKSLCNACGIRQRKAR 236
                       *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.19E-12197237No hitNo description
SMARTSM004012.4E-19197249IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.268201233IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.0E-14201236IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.12E-14202239No hitNo description
PROSITE patternPS003440203228IPR000679Zinc finger, GATA-type
PfamPF003203.0E-15203236IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010255Biological Processglucose mediated signaling pathway
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MSTIYMSQLS AALPLMEGEH HHHHQDHHQG HFQAFSLQPK DPPVLFPFVI SRRSSSSSPS  60
DSTTLSYGSD HHLTQQQQHQ HQAMLEPQNM IGGSSAGIFA TPFPTVKSIR DDMIERSQFD  120
PYDTEKLQAS CGLAKVVAGG KWSAVPAAKM KITRKMGEPS SGVTGGAATT VAPKKPRRRP  180
AQAYEDHGHG GAMGQAFGVI RVCSDCNTTK TPLWRSGPCG PKSLCNACGI RQRKARRAMM  240
ASGLPASPNA AGPKAAAHSG AAAVAAAQPK VKKEKRADVD RSSLPFKKRC KVVQVEDHQT  300
LPAATNAAAA AAMEETAESA TVAPPPAPTT RGGTLVDSIG LSWSKTHAAA TASCSFRPSP  360
VAPGFAAAVQ DEITDAAMLL MTLSCGLVRS *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172179PKKPRRRP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.879140.0flower| leaf| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329798750.0
Expression AtlasB9FTU8-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g37450.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g37450
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0698510.0AK069851.1 Oryza sativa Japonica Group cDNA clone:J023034D16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641328.10.0protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1-like
RefseqXP_015641329.10.0protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1-like
RefseqXP_025882362.10.0protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1-like
TrEMBLA0A0E0PZE00.0A0A0E0PZE0_ORYRU; Uncharacterized protein
TrEMBLB9FTU80.0B9FTU8_ORYSJ; Uncharacterized protein
STRINGORUFI06G20160.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18933899
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.12e-19GATA family protein