PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g37410.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 566aa    MW: 59620.6 Da    PI: 7.9652
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g37410.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.29.5e-16326372554
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       h + ErrRR+riN++f++Lr llP +   p+ K +Ka+iL  ++eY+ +L
  LOC_Os06g37410.1 326 HMISERRRRERINDSFQTLRALLPLP---PDSKKDKAAILASTTEYMDKL 372
                       8899**********************...*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.094321372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-18322392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-17325391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-13326372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-14327378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.18E-7336372No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    Send to blast
MGRAAARLPG CLYLCLWAPA AAIAGGVQPN HLFCLDAWIG GGGGVGAGGG GGDRALELFE  60
AYRGALCAAV SGCVPGWAYK EGAACMELTE HDLAASASLQ VQQQFYHETG TKMAVFMGCD  120
SGEIEVGLSA ASATATAAVV GEMQQSILEE LLQMPPPPPS PSSSSLLSLS VGSPEYSSLV  180
RSMATSVGAS AAADPSPVHG GLLAPVYGEF PGSDDDAAMA QAMLAVISTP APPPPLWRPP  240
RRRARSSSSP RRATAFKAYN AALSPRARPR PGAPGQRMIK TGISLLASVH MQTRSRELAA  300
ARQRDTHAAP PPPPPPPPPS SSQLHHMISE RRRRERINDS FQTLRALLPL PPDSKKDKAA  360
ILASTTEYMD KLISQVSELG EKNRQLEAQL AARSGEAQWP AASGGGGGES SSERVQVDVV  420
IAGSSASTDQ PREVSIRVTV RAECDVSELV VAVLARLREM GRFAVVSVDA GRRSSSFAQA  480
SLTFRVMNYK YKTNSVTVGK SQLIVHTEKY KAGDVCDETS LKEAVAKAVD GAAFFKFQRT  540
PFMHSKNYDQ SDDLEGEAKL LPLDS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1239245PRRRARS
2329334ERRRRE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.919580.0flower| leaf| panicle
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g37410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g37410
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0054600.0AP005460.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0610D01.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882299.10.0putative transcription factor bHLH041
TrEMBLB8B3U20.0B8B3U2_ORYSI; Uncharacterized protein
TrEMBLC7J3C10.0C7J3C1_ORYSJ; Os06g0570950 protein
STRINGORUFI06G20120.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39773367
Representative plantOGRP85811114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.13e-20bHLH family protein