PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g36970.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 962aa    MW: 110351 Da    PI: 8.3681
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g36970.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR191.89.2e-29209317191
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...................tekerrtraetrtgCkaklkvkkekdg 74 
                       +fYn YA++vGFs++k+++++s++++ +t++tf+C+++ k+++ k+k                    +k+r+++++  t+Cka+++++++ +g
  LOC_Os06g36970.1 209 DFYNGYAYMVGFSTCKASNYHSRKTDVVTRHTFKCNRWRKPSDPKEKdlpevdeaenclqtnttnpLVKKRKQNKVVYTNCKAEMVITLK-RG 300
                       6*****************************************999999****************9999**********************.** PP

              FAR1  75 kwevtkleleHnHelap 91 
                        w++t+l+leHnH+l+p
  LOC_Os06g36970.1 301 FWYITRLNLEHNHPLSP 317
                       **************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.5E-27209317IPR004330FAR1 DNA binding domain
PfamPF105518.2E-34437531IPR018289MULE transposase domain
PROSITE profilePS509669.866722758IPR007527Zinc finger, SWIM-type
PfamPF044341.2E-4729758IPR007527Zinc finger, SWIM-type
SMARTSM005751.5E-5733760IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 962 aa     Download sequence    Send to blast
MDRKNLRKFY LMEGTEAESN EDYGMLFRLS QEGGITYTNL IQQVSVSPNA NLAGAEVAGG  60
LPLLQNTYGS FMQLLQAPIE SESALYLTSN RFEYDNTFWG FDPHNGYQQN DLQNAQTDTS  120
QMCNSLPQSV AVHPPVASLD MLYNEMQKSS ADIDNQAEMC RPTVQLKASS VEVIYNEIVA  180
VVQRGGQDAN SAHVPSINKV FADENEAFDF YNGYAYMVGF STCKASNYHS RKTDVVTRHT  240
FKCNRWRKPS DPKEKDLPEV DEAENCLQTN TTNPLVKKRK QNKVVYTNCK AEMVITLKRG  300
FWYITRLNLE HNHPLSPPEE RKFLRSHKHM TDQEKLLIRT LNKINVPTRM IMSVLSYVRG  360
GLSAVPYTKK AVSNYRDFVR RESGKNDMMQ CLDFFEKKRS EDPLFYFRFR TDENNVVKSL  420
FWSDGNSRKF YEMFGDIVSF DTTYKTNRYD LPFAPFVGIT SHGDNCLFGY AFLQDESSET  480
FQWLFNTFLD CMGGKLPATI ITDQDLAMKA AIAIVFPDTV HRNCLFHMLS NARDKTGRTF  540
NSEDEEVYKD FHDIVTKSQT EAEFEYLWKD FIRRNNLYNV RYFQLIWVTR KRWALVYFKS  600
NWCPLIQTTA RSEGTNSRYK ADICSSHSVS AFLAQYERIA ETIYECFKEQ ESLTRNTVPD  660
TWSEYQFEKQ AAKLYTRKIF WAFQRILQSY TKYDVTVKVR DSIFEVYKSE IHALQDFRKR  720
KYIVVVDTIS EEYECICSRF KKDGILCVHV LRVLIHLNIT KLPEKYFIER WRLKDKNQEL  780
SVPNTLMSAT VLESNPLLRF NILSQKMIKL ASDASKTKEK FIYVMNESDK IEDGLKAMSD  840
TAPNKATVHV QDAAATTCGV ASVGAQSGIL MGPSGVGIDA ESTKGAVAET ETTDMVGIAS  900
TSVLLDPKCS NIKGRHKSEP RKKRLIDVIR SKGLVTCSGC GSHDHNIRTC PKKKRSQMQQ  960
K*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1273280PLVKKRKQ
2914923RHKSEPRKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g36970.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g36970
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0054560.0AP005456.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0513E02.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642362.10.0protein FAR1-RELATED SEQUENCE 7-like
TrEMBLQ53MC80.0Q53MC8_ORYSJ; Transposon protein, putative, unclassified
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-89FAR1-related sequence 5