PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g35960.1
Common NameHSF16, HSFC2B, LOC4341273, Os06g0553100, P0427B07.22
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family HSF
Protein Properties Length: 279aa    MW: 28971.3 Da    PI: 8.2372
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g35960.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind105.54.4e-33121032102
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       F+ k+y+++ed+ ++ +i w + +nsfvv d+  f++++Lp +Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+h sF +g+++ll
  LOC_Os06g35960.1  12 FVWKTYRMVEDPGTDGVIGWGKGNNSFVVADPFVFSQTLLPAHFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFAHASFLRGQTHLL 95 
                       9****************************************************************999.........**************** PP

                       XXXXXXXX CS
      HSF_DNA-bind  95 ekikrkks 102
                       ++i r+ s
  LOC_Os06g35960.1  96 RNIVRRGS 103
                       *****976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004157.0E-528101IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.109.6E-389101IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.14E-339101IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.0E-2812101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-171235IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-175062IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405175IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-176375IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009009anatomyplant embryo
PO:0001081developmental stagemature plant embryo stage
PO:0007042developmental stagewhole plant fruit formation stage
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MAAAAGGGAA PFVWKTYRMV EDPGTDGVIG WGKGNNSFVV ADPFVFSQTL LPAHFKHNNF  60
SSFVRQLNTY GFRKVDPDRW EFAHASFLRG QTHLLRNIVR RGSAAAGGGG GGGGGKRRDA  120
SADGGGGGGD EDMTMVATEV VRLKQEQRTI DDRVAAMWRR VQETERRPKQ MLAFLLKVVG  180
DRDKLHRLVG GGGNGNGAAT AAAADNGFAD AARAGCGEKR ARLLLDGDNT GAFGPDAVDF  240
AGFYTGADMF PDVAVDAAAA AAGGSAGCSF AFGVDSGY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-25410120129Heat shock factor protein 1
5d5v_B4e-25410120129Heat shock factor protein 1
5d5v_D4e-25410120129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.741421e-116callus| flower| panicle
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ0DBL6
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g35960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g35960
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0036820.0AP003682.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0427B07.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641665.10.0heat stress transcription factor C-2b
SwissprotQ0DBL60.0HFC2B_ORYSJ; Heat stress transcription factor C-2b
TrEMBLA0A0E0LCI01e-151A0A0E0LCI0_ORYPU; Uncharacterized protein
STRINGOPUNC06G16360.11e-152(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44713470
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.12e-56heat shock transcription factor C1
Publications ? help Back to Top
  1. Baniwal SK, et al.
    Heat stress response in plants: a complex game with chaperones and more than twenty heat stress transcription factors.
    J. Biosci., 2004. 29(4): p. 471-87
    [PMID:15625403]
  2. Guo J, et al.
    Genome-wide analysis of heat shock transcription factor families in rice and Arabidopsis.
    J Genet Genomics, 2008. 35(2): p. 105-18
    [PMID:18407058]