PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os06g35140.1 | ||||||||
Common Name | B1068H08.25, LOC4341235, Os06g0543200, OsJ_21617, OSNPB_060543200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | G2-like | ||||||||
Protein Properties | Length: 544aa MW: 58320.1 Da PI: 6.2108 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 99.8 | 1.9e-31 | 127 | 180 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+ave+LGG+e+AtPk +l++m+v gL+++hvkSHLQ+YR+ LOC_Os06g35140.1 127 PRLRWTPDLHMAFVHAVERLGGQERATPKLVLQMMNVRGLSIAHVKSHLQMYRS 180 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.601 | 123 | 183 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.4E-29 | 123 | 181 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.38E-14 | 126 | 181 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.6E-22 | 127 | 182 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 9.5E-9 | 128 | 179 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root |
Sequence ? help Back to Top |
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Protein Sequence Length: 544 aa Download sequence Send to blast |
MGEVKENEVV EIFEHDHDNK IRSPENSVPP AMVLDLNEGF GEGSEEGGVG EDGDEEDDDE 60 DDDDDDDDDG GSTSEVAGGG RSSSNNSSTN HNSGSDKDHD MNSSSSKADG GGDRVPTVRQ 120 YNRSKLPRLR WTPDLHMAFV HAVERLGGQE RATPKLVLQM MNVRGLSIAH VKSHLQMYRS 180 KKLDHESGHE RGAISSVFSP MEFHMRRGDH RFHHHDMFFQ RAAAAGVSPF SSRMLHENGG 240 GFFASRNPGL PESSRLYGLF QRRQQAPMQK FDFKNCNSFS RNQEWAFNQQ HAAARAAGAV 300 NGHGPAKGLI HEMIFRKEGK PTSHLFDVRD AIASTRVTSA TTAAAADHRL DGAGKAGNFD 360 WIGSSSSRPL TRTMSAAAAA TMGDHHHLRW RGGAAGSGNT TASSDPVVAS EAALGSLLER 420 AKTKATEAMR LETPVKMTAA AVAAEEINGR TPDLQLSLSP NAGDHRSAGE KRKFLSEQEV 480 DSDKQQLPLT LSLSLRGGGD NGGGGGAEAA GRLEEEMTGS SSSKKAALGL STLDLTMSIK 540 ALE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 5e-18 | 128 | 182 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 5e-18 | 128 | 182 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 5e-18 | 128 | 182 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 5e-18 | 128 | 182 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.87813 | 0.0 | callus| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32983629 | 0.0 | ||||
Expression Atlas | Q5Z6X2 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os06g35140.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os06g35140 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK073606 | 0.0 | AK073606.1 Oryza sativa Japonica Group cDNA clone:J033048N17, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641453.1 | 0.0 | uncharacterized protein LOC4341235 isoform X1 | ||||
TrEMBL | Q5Z6X2 | 0.0 | Q5Z6X2_ORYSJ; MYB transcription factor-like | ||||
STRING | OS06T0543200-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2754 | 36 | 86 | Representative plant | OGRP285 | 15 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38300.1 | 2e-34 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os06g35140.1 |
Entrez Gene | 4341235 |