PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os06g33940.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NAC | ||||||||
Protein Properties | Length: 377aa MW: 41411.8 Da PI: 7.1204 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.6 | 2e-52 | 10 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 +ppGfrFhPtdeel+ +yL+kkv+ + ++l +vi+e+d++k+ePwdL+ ++ + ++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk LOC_Os06g33940.1 10 VPPGFRFHPTDEELLYYYLRKKVAYEAIDL-DVIREIDLNKLEPWDLKDrcRIGTgPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDK 101 69****************************.9***************943444442456********************************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ ++ +g++ktLvfy grap+g+ktdW+mheyrl LOC_Os06g33940.1 102 AIFLANACRIGMRKTLVFYVGRAPHGKKTDWIMHEYRL 139 ************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.41E-59 | 5 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.154 | 10 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-27 | 11 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence Send to blast |
MHPSGGALSV PPGFRFHPTD EELLYYYLRK KVAYEAIDLD VIREIDLNKL EPWDLKDRCR 60 IGTGPQNEWY FFSHKDKKYP TGTRTNRATT AGFWKATGRD KAIFLANACR IGMRKTLVFY 120 VGRAPHGKKT DWIMHEYRLD QDNVDVQEDG WVVCRVFMKK SYQRGLNPAD MAAVDDDDLL 180 HHHHHPFPPA QLHGGAADHK HDGAGGHHHH HLMQPHHHYD DFPSFDPSMQ LPQLMSADQP 240 PPPPPSLLPG VPPSAAAALS SLDVECPQNL MKLTSAAAGG GATGLLHAGG DHRFATAATD 300 WSILDKLLAS HQNLDQLFQG RVIAGASSPA AMAAPSHHQH LMDQLAGGGG GTASSLQRLP 360 LQYLGCEAAD LLRFSK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-50 | 8 | 161 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-50 | 8 | 161 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-50 | 8 | 161 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-50 | 8 | 161 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-50 | 8 | 161 | 18 | 170 | NAC domain-containing protein 19 |
3swm_B | 4e-50 | 8 | 161 | 18 | 170 | NAC domain-containing protein 19 |
3swm_C | 4e-50 | 8 | 161 | 18 | 170 | NAC domain-containing protein 19 |
3swm_D | 4e-50 | 8 | 161 | 18 | 170 | NAC domain-containing protein 19 |
3swp_A | 4e-50 | 8 | 161 | 18 | 170 | NAC domain-containing protein 19 |
3swp_B | 4e-50 | 8 | 161 | 18 | 170 | NAC domain-containing protein 19 |
3swp_C | 4e-50 | 8 | 161 | 18 | 170 | NAC domain-containing protein 19 |
3swp_D | 4e-50 | 8 | 161 | 18 | 170 | NAC domain-containing protein 19 |
4dul_A | 3e-50 | 8 | 161 | 15 | 167 | NAC domain-containing protein 19 |
4dul_B | 3e-50 | 8 | 161 | 15 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.4386 | 0.0 | callus |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32987433 | 0.0 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaf blades, developing flowers, embryo and callus. Weakly expressed in roots. {ECO:0000269|PubMed:10660065}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os06g33940.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os06g33940 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB028186 | 0.0 | AB028186.1 Oryza sativa mRNA for OsNAC7 protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015644283.1 | 0.0 | NAC domain-containing protein 76 | ||||
Swissprot | Q5Z6B6 | 1e-147 | NAC76_ORYSJ; NAC domain-containing protein 76 | ||||
TrEMBL | A0A0E0PYP4 | 0.0 | A0A0E0PYP4_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI06G18140.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3461 | 37 | 81 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79580.3 | 1e-87 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os06g33940.1 |
Publications ? help Back to Top | |||
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