PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g33450.1
Common NameLOC9268477, Os06g0526100, OSNPB_060526100
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 396aa    MW: 41511.3 Da    PI: 6.977
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g33450.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.98.6e-14136186255
                       HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       ++ah ++Er+RR+++N+ ++ Lr+l+P     + k+ + a+i   +v+YIk+Lq
  LOC_Os06g33450.1 136 KTAHIAVERNRRKQMNENLAVLRSLMPCF---YVKRGDQASIIGGVVDYIKELQ 186
                       689*************************9...9********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.513134185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.3E-11136186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.81E-14136190No hitNo description
SuperFamilySSF474591.28E-16136207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-14136197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-10140191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000032anatomytetrad of microspores
PO:0001029developmental stageE tetrad stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MGDALCDQLL LVDSDGGEFI PHHADADADD LFTILETWEG CANVVAGGAP ATTTTLGSPI  60
AAAACISGVV GGQNHQQLPE PAAAKTVPAT NNKRREEEVA DRDGDGDDDD GSPQKRRKCC  120
SPESSTTDVA AATTPKTAHI AVERNRRKQM NENLAVLRSL MPCFYVKRGD QASIIGGVVD  180
YIKELQQVLH SLEAKKQRKV YTDQVLSPRP PATVAASCCS PRPPQLSPRL PPQLLKSTPP  240
LSPRLAVPIS PRTPPTPGSP YRLLRLPPPP PPASGSNYAS PAMTPTHHET AAPSLDAIAA  300
ELSAYASRQA LGGGLLLPDV KVEFAGANLV LKTVSQRSPG QAVKIIAALE GRSLEILHAK  360
ISTVDDTAVN SFTVKVCTAS LLLHGTAISA LALIM*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.730310.0seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1567640970.0
Expression AtlasA0A0P0WXG4-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g33450.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g33450
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2874820.0AK287482.1 Oryza sativa Japonica Group cDNA, clone: J043025B18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882342.10.0transcription factor SPEECHLESS
TrEMBLA0A0P0WXG40.0A0A0P0WXG4_ORYSJ; Os06g0526100 protein
STRINGOS06T0526100-010.0(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53210.13e-35bHLH family protein