PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os06g29020.1 | ||||||||
Common Name | LOC4341065, OJ1568_D07.5-1, Os06g0485100, OSNPB_060485100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | HB-other | ||||||||
Protein Properties | Length: 371aa MW: 40975 Da PI: 7.2988 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27.6 | 5e-09 | 13 | 75 | 6 | 56 |
S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRakek 56 +ft+ ++ e+e+ ++ n p ++ ++ LA+k ++ +qV +WFqNrR+ ++ LOC_Os06g29020.1 13 RFTQAEVAEMEARLQQlnNAIPHRSVIQALADKFtssparsgkvAVQPKQVWNWFQNRRYSHR 75 69*************776999***************************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 0.0056 | 7 | 81 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 9.7E-8 | 12 | 80 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.84E-11 | 12 | 78 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.9E-6 | 13 | 75 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 10.139 | 13 | 77 | IPR001356 | Homeobox domain |
Pfam | PF16719 | 5.7E-41 | 126 | 253 | IPR032001 | SAWADEE domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003682 | Molecular Function | chromatin binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence Send to blast |
MGRPPSTGGP AFRFTQAEVA EMEARLQQLN NAIPHRSVIQ ALADKFTSSP ARSGKVAVQP 60 KQVWNWFQNR RYSHRSRSSR GPPTLMQTKM LPTGSDEHKS PPFRAMPSAS AHSGSPSGKG 120 SLESGQVEFE AKSARDGAWY DVAAFLSHRL FESGDPEVRV RFSGFGAEED EWINVRKCVR 180 QRSLPCESTE CVAVLPGDLI LCFQEGKEQA LYFDACVLDA QRRRHDVRGC RCRFLVRYDH 240 DHSEEIVPLR KVCRRPETDY RLQILHAARA AGMAKEAVVD LVSHNDKSSA EQKPPKQHKM 300 MDVNTDEVTM VSNQDQEEPT GKPAATLPAA PVKTLNDSAS ASASDVQMGE AQAAPKVESS 360 DEVEDKMKEG * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4iuq_A | 1e-46 | 124 | 257 | 1 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuq_B | 1e-46 | 124 | 257 | 1 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iur_A | 1e-46 | 124 | 257 | 1 | 134 | SHH1 SAWADEE |
4iur_B | 1e-46 | 124 | 257 | 1 | 134 | SHH1 SAWADEE |
4iut_A | 1e-46 | 124 | 257 | 1 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iut_B | 1e-46 | 124 | 257 | 1 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuu_A | 1e-46 | 124 | 257 | 1 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuu_B | 1e-46 | 124 | 257 | 1 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuv_A | 1e-46 | 124 | 257 | 1 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuv_B | 1e-46 | 124 | 257 | 1 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.18095 | 0.0 | callus| flower| leaf| panicle| root| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32978577 | 0.0 | ||||
Expression Atlas | Q67W46 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os06g29020.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os06g29020 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK104282 | 0.0 | AK104282.1 Oryza sativa Japonica Group cDNA clone:001-006-D08, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015644221.1 | 0.0 | protein SAWADEE HOMEODOMAIN HOMOLOG 2 | ||||
Swissprot | Q8RWJ7 | 1e-127 | SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2 | ||||
TrEMBL | Q67W46 | 0.0 | Q67W46_ORYSJ; Os06g0485100 protein | ||||
STRING | OS06T0485100-03 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4190 | 29 | 48 | Representative plant | OGRP1641 | 14 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18380.1 | 1e-105 | sequence-specific DNA binding transcription factors;sequence-specific DNA binding |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os06g29020.1 |
Entrez Gene | 4341065 |