PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g28150.1
Common NameOs06g0475800
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 727aa    MW: 82587.6 Da    PI: 5.8266
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g28150.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR154.44.3e-1793177290
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwev....tkleleHnHela 90 
                       fYn+YA++vGF+vrks+s+          r+ +Cs+egk++ + ++ +k++r+r + r+gC+a ++v++  ++  +v    ++++ eHnH+l+
  LOC_Os06g28150.1  93 FYNKYAEHVGFDVRKSRSRAA-------YREICCSREGKNKYRGDE-TKRERRRGSARIGCRAYVRVRNVVREGEVVsvvfDDVVVEHNHPLT 177
                       9***************98877.......7899************99.9999999**************99855444411125677******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.6E-1293177IPR004330FAR1 DNA binding domain
PfamPF105514.6E-7317350IPR018289MULE transposase domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0010018Biological Processfar-red light signaling pathway
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0025281anatomypollen
PO:0001015developmental stageK second mitotic division stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 727 aa     Download sequence    Send to blast
MASGGEDPGP FDVRSHVPTL GVDRSHLMQG SGVHPHDDVQ RGGLQQLGAG DREEEIQGAS  60
QPERIALHGA HVPDEMVPKF GMEFKSYEMA YAFYNKYAEH VGFDVRKSRS RAAYREICCS  120
REGKNKYRGD ETKRERRRGS ARIGCRAYVR VRNVVREGEV VSVVFDDVVV EHNHPLTRSP  180
SAVKHMRSHK QRDDTLMEFV DTMQQCRVPQ SSVMGVLSDM HGDCETIPFT TRDLENRKTA  240
NVREENADDI SKLLNFFNEC KKDNPKFYWD IKTYEEGVAL TITYNQHFLD VPCFEMKGLN  300
HLSGYLRRSR IAWATAVRPR CILTDQDPAM AIAVGRAFPY TIHRLCRWHI IDGHSDHLNT  360
IFMRHKDTET EMMVCINQTY TPIEFEYAWK EFIDKFGLHD STVLRDLYDI RHRWVPAFFK  420
EDYCGSVPNV KTAWPFAEQL SRVYTRAVFK VFENTLDESV HFRIEQYGVD QTQWIISHSK  480
RSEKHDWCQR QFKDKGIVIG CTAASKVGEE VAVAFERATS VMKGLRNQLE EIPVDVHGLD  540
ADDGVSEHEV DVGDGAGPSI HRGGSAGDEI SKRPPPKSMT KGRGSDSNET ERCWLSTGDS  600
TGRRVDGWNI WVGVDNDVTE RLTPSPVMRE VDLPPEFRVR GPPMPDWPPP PTESDEERFQ  660
EDLEQYYNDG YVSTPCPSPA SDLCDSEENL EDEVRKMIIG GMGMCCLRLI NKGYSVAAEQ  720
AQEGLG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.788250.0panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154680750.0
Expression AtlasQ0DC72-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g28150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g28150
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0035200.0AP003520.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0021H10.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612933.11e-133protein FAR1-RELATED SEQUENCE 5 isoform X1
RefseqXP_015612934.11e-133protein FAR1-RELATED SEQUENCE 5 isoform X2
TrEMBLQ0DC720.0Q0DC72_ORYSJ; Os06g0475800 protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1625822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-37FAR1-related sequence 5