PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g25610.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 324aa    MW: 37420.1 Da    PI: 6.9507
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g25610.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR157.64.2e-1891176291
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwev....tkleleHnHela 90 
                       fYn+YA+++GF+vrks+s++        +r+ +Cs+egk++ + ++ +k++r+r + r+gC+a ++v++  ++  +v    ++++ eHnH+l+
  LOC_Os06g25610.1  91 FYNKYAEHAGFDVRKSRSRSA-------HREICCSREGKNKYRGDE-TKRERRRGSARIGCRAYVRVRNVMREGEVVsvvfDDVVVEHNHPLT 175
                       ****************98877.......7899************99.9999999**************98844444411125678******98 PP

              FAR1  91 p 91 
                       p
  LOC_Os06g25610.1 176 P 176
                       6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.4E-1391176IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MASRGEDPDP YDVRSHVPTL GADRSHLINW VLEMEDIKGA RRPESHPPCV DDAQMKTPTR  60
NVMHIHGAQV SDEMVPKFGM EFESYDMAYA FYNKYAEHAG FDVRKSRSRS AHREICCSRE  120
GKNKYRGDET KRERRRGSAR IGCRAYVRVR NVMREGEVVS VVFDDVVVEH NHPLTPSPSA  180
MKHMRSYKQR DDTLMEFVDT MQQCRVPQSS IMGVLSEMHG DRESIPFTNR DLENRKAANV  240
REENADDISK LLKFFNECKK DNPKFYWDIK TDEEGVVKNV FWSHASMQAE YANFGDAITF  300
DTTYKTNIYG MLSRPEVSPF FFL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.788250.0panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154680750.0
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g25610.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g25610
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0048020.0AP004802.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0640D01.
GenBankAP0059280.0AP005928.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBb0031F23.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612933.11e-105protein FAR1-RELATED SEQUENCE 5 isoform X1
RefseqXP_015612934.11e-105protein FAR1-RELATED SEQUENCE 5 isoform X2
TrEMBLA0A0P0WWU31e-156A0A0P0WWU3_ORYSJ; Os06g0362000 protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76091043
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-31FAR1-related sequence 5