PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os06g21390.4 | ||||||||
Common Name | LOC4340884, MKRN, Os06g0318700, OsJ_21146, P0468A12.33, P0592B08.7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C3H | ||||||||
Protein Properties | Length: 265aa MW: 30012.2 Da PI: 6.8071 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25.3 | 2.6e-08 | 47 | 68 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C+ fa++G C+yG+ C+ +Hg LOC_Os06g21390.4 47 PICS-FAAGGNCPYGEECPQMHG 68 6788.*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 11.713 | 43 | 70 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0012 | 44 | 69 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-5 | 47 | 68 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF57850 | 2.56E-12 | 100 | 176 | No hit | No description |
Gene3D | G3DSA:3.30.40.10 | 2.7E-10 | 105 | 171 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
CDD | cd00162 | 5.55E-4 | 111 | 171 | No hit | No description |
PROSITE profile | PS50089 | 12.297 | 112 | 170 | IPR001841 | Zinc finger, RING-type |
Pfam | PF00097 | 1.2E-7 | 112 | 169 | IPR018957 | Zinc finger, C3HC4 RING-type |
SMART | SM00184 | 2.7E-7 | 112 | 169 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS00518 | 0 | 136 | 145 | IPR017907 | Zinc finger, RING-type, conserved site |
PROSITE profile | PS50103 | 14.089 | 199 | 228 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0047 | 199 | 227 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.6E-4 | 200 | 229 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016567 | Biological Process | protein ubiquitination | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0016874 | Molecular Function | ligase activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001015 | developmental stage | K second mitotic division stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MDVLAHSGSK PVWRNDFQHE SVLEDGIDWS ISPTVQNQTT LSPADLPICS FAAGGNCPYG 60 EECPQMHGDL CTTCGKMCLH PYRPDEREEH TKLCEKNHKR LESLKRSQEI ECSVCLDRVL 120 SKPTAAERKF GLLSECDHPF CISCIRNWRN NSPTSGMDVN SALRACPICR KLSYYVIPSV 180 LWYFSKEEKL EIIDNYKAKL KSIDCKYFDF GTGTCPFGSS CFYKHAYRDG RLEEVILRHL 240 DADDGSTVIA KNIRLSDFLS RLHL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 101 | 106 | ESLKRS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.26343 | 0.0 | callus| flower| leaf| panicle| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 37989873 | 0.0 | ||||
Expression Atlas | Q5ZA07 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in dry seeds. Increased expression throughout imbibition and germination and when radicle and shoots are emerging. Up-regulated during cell differentiation. {ECO:0000269|PubMed:17870591}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in primary roots and leaves. Detected in vascular bundle tissues. {ECO:0000269|PubMed:17870591}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | E3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os06g21390.4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os06g21390 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK120250 | 0.0 | AK120250.1 Oryza sativa Japonica Group cDNA clone:J013045F22, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015643585.1 | 0.0 | E3 ubiquitin-protein ligase makorin | ||||
Swissprot | Q5ZA07 | 0.0 | C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin | ||||
TrEMBL | A0A0E0HPT9 | 0.0 | A0A0E0HPT9_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0PX27 | 0.0 | A0A0E0PX27_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI06G13430.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | ONIVA06G14620.1 | 0.0 | (Oryza nivara) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08505.2 | 1e-125 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os06g21390.4 |
Entrez Gene | 4340884 |
Publications ? help Back to Top | |||
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