PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g20020.1
Common NameLOC107278701, OsJ_21086
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 433aa    MW: 47538.4 Da    PI: 7.3779
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g20020.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.0011114135223
                       EETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                       +C+ C+k+F++  ++  H+r+H
  LOC_Os06g20020.1 114 ECQVCHKRFKNDKSMFGHLRSH 135
                       6*******************99 PP
2zf-C2H211.50.0009285307123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       y C++C++ Fs++  L  H+  H
  LOC_Os06g20020.1 285 YMCKHCNEEFSTHQALGGHMAGH 307
                       89******************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.096113135IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.037113140IPR007087Zinc finger, C2H2
SuperFamilySSF576671.03E-7114135No hitNo description
PfamPF139123.1E-4114135IPR007087Zinc finger, C2H2
PROSITE patternPS000280115135IPR007087Zinc finger, C2H2
SuperFamilySSF576671.03E-7280307No hitNo description
Gene3DG3DSA:3.30.160.607.0E-4284311IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.081285308IPR015880Zinc finger, C2H2-like
PfamPF139122.7E-7285310IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.596285312IPR007087Zinc finger, C2H2
PROSITE patternPS000280287308IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MSGCSWLCSL VILQAVCSAC WQVAGANSLR LAVGQIGGVF VYLQDPSLMS RRARDELVDG  60
SCSGDEDLAD HGAWPQPGGG AGGDHGGVPR GGEAGEAEAD VDVDGDGGSA GDVECQVCHK  120
RFKNDKSMFG HLRSHPNRGY KGATPPLKMS STPSSSSPVI PAGSPPPQPP PSSSSSLRPV  180
GDSNSSMPTP GISLTTYEKL AACVMLTLRR RYDRDQRQLQ APPKLERAGA GDQLATNMVE  240
GAEGSSRAIV RDEHEARRRK KGKRKLKEPR EEERKVKKEK KRHPYMCKHC NEEFSTHQAL  300
GGHMAGHHKE KRILLKEKQR ERSLVLEKEP ERSHHLMEEK HPERGLILEK KQLERSSIVL  360
KEKQPDKNLI LEEEQPEVVY QDKIDQTMNW QKTERNEGVS YLGGGSNTAP IAQEDSRPPF  420
GFDLNVEAPE QE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1258265RKKGKRKL
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329951060.0
Expression AtlasA3BB11-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g20020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g20020
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0061640.0AP006164.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:B1386G10.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642158.10.0uncharacterized protein LOC107278701
TrEMBLA0A0E0PWT30.0A0A0E0PWT3_ORYRU; Uncharacterized protein
TrEMBLA3BB110.0A3BB11_ORYSJ; Uncharacterized protein
STRINGORUFI06G12650.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139162028
Representative plantOGRP1588633