PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os06g19980.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MYB_related | ||||||||
Protein Properties | Length: 640aa MW: 73286.6 Da PI: 9.4497 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22 | 3.8e-07 | 424 | 464 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT+eE e++ + v++ G+ W + a+++g +++ ++k+ w+ LOC_Os06g19980.1 424 KWTPEEYEKIRRHVEKNGTS-WISLAQELG--KSEIHLKDTWRR 464 8*****************99.********8..9*******9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 1.2 | 348 | 419 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 3.95 | 351 | 417 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 1.2E-6 | 397 | 471 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.51 | 421 | 468 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-6 | 423 | 471 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.806 | 424 | 466 | IPR017877 | Myb-like domain |
Pfam | PF13921 | 1.3E-5 | 425 | 468 | No hit | No description |
SMART | SM00717 | 21 | 486 | 552 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 6.574 | 487 | 550 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-5 | 489 | 569 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.64E-6 | 530 | 607 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.898 | 552 | 605 | IPR017877 | Myb-like domain |
SMART | SM00717 | 19 | 556 | 607 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 640 aa Download sequence Send to blast |
MGGEGAERRS KKKEKGKRQE EKAESGSRGD GEAVKLDLAT DFPSNSMGKV AMDVEEAKEV 60 HRRKKRKEKE KDHGKEKKNK VIADNIEEAC AEAEQAEASG LKVEQHCSEH VQGDMSKCGS 120 EEDKSIKKDN KLMKKKKKKE RKVEMAEEGQ ILAGSTDENA GLLHAEMGRG EKEQGKKSKK 180 SKRKHEDGEP VADGSAGDEI MTNRDKKRRR KEHSVELKEG DQVNISKKAV KIKGNKKRKN 240 ESDKFNPDLS TDALTGEDKV GGDGKNDKRK KKNDTSTRRN EVGRDDKNDK KKKKSKERNG 300 GRKGEKEKAA QSKDKVRRVS FSDAVEVFSI NDGEDEDNGK SAESEVVHGK RFTPEENATL 360 MEAIMSYIEM KQLGENGLEM IRACSKHPEL KGCWAEIGKS LPHRPLTAIY KRARILLYRS 420 DERKWTPEEY EKIRRHVEKN GTSWISLAQE LGKSEIHLKD TWRRIKPKNL KSVARFCISI 480 KWKDSLQSQW TQDEYQNLFD LVNLDLRVKA HQEYDAGNRK LRDNIAWEAI SDKLTTRNHK 540 NCCLKWYYQL ASPLVQKGIW ADTDDYRLVE ALQNVDAVCV EDIDWDNLLD HRSGEVCRQR 600 WNEMVRYLGG HKEKPFIEQV EVLSKRYCPE MVDYREGEA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 62 | 67 | RKKRKE |
2 | 62 | 68 | RKKRKEK |
3 | 133 | 141 | KKKKKKERK |
4 | 205 | 210 | KKRRRK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.18071 | 0.0 | callus| seed |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os06g19980.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os06g19980 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP006166 | 0.0 | AP006166.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:B1435D02. | |||
GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015643783.1 | 0.0 | RNA polymerase I termination factor isoform X1 | ||||
TrEMBL | A0A0E0PWS9 | 0.0 | A0A0E0PWS9_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI06G12620.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5405 | 26 | 35 | Representative plant | OGRP5322 | 14 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41020.1 | 9e-95 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os06g19980.1 |