PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os06g17480.1 | ||||||||
Common Name | LOC4340772, Os06g0285200, OsHAP3D, OSNPB_060285200, P0491D10.32 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NF-YB | ||||||||
Protein Properties | Length: 251aa MW: 25965.1 Da PI: 5.5502 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 158 | 1.5e-49 | 29 | 123 | 1 | 95 |
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 vreqdr++Pianv+rim++vlP +akis+dake++qecvsefisfvt+ea+d+c+re+rkt++++dl+wa+ lGf+dyv pl++yl++ re LOC_Os06g17480.1 29 VREQDRLMPIANVIRIMRRVLPPHAKISDDAKEVIQECVSEFISFVTGEANDRCHREHRKTVTAEDLVWAMDRLGFDDYVPPLTAYLRRMREY 121 69******************************************************************************************9 PP NF-YB 94 eg 95 eg LOC_Os06g17480.1 122 EG 123 97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.5E-45 | 27 | 123 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.95E-36 | 32 | 129 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.6E-24 | 36 | 99 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 5.1E-13 | 63 | 81 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 66 | 82 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 5.1E-13 | 82 | 100 | No hit | No description |
PRINTS | PR00615 | 5.1E-13 | 101 | 119 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MEPAFPNGGA AAPPPPMAAE QLPPAAAVVR EQDRLMPIAN VIRIMRRVLP PHAKISDDAK 60 EVIQECVSEF ISFVTGEAND RCHREHRKTV TAEDLVWAMD RLGFDDYVPP LTAYLRRMRE 120 YEGGGSGGGG GGGRGAAAAP AVVPPPPPPP PEDAFRYVQV HHPVYAAPGE PVQGYGYPVA 180 MSSALPAPHV HVGVRGGGQH EVFGGGPAPL AVYYGGAPYG EASSRGGCSA ADEGSSSSSA 240 SPAPVGPNYE * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 2e-52 | 29 | 120 | 6 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.9495 | 0.0 | panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 37542677 | 0.0 | ||||
Expression Atlas | Q5VNF4 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os06g17480.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os06g17480 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB288035 | 0.0 | AB288035.1 Oryza sativa Japonica Group OsHAP3D mRNA for HAP3 subunit of HAP complex, complete cds. | |||
GenBank | AK109660 | 0.0 | AK109660.1 Oryza sativa Japonica Group cDNA clone:002-141-E08, full insert sequence. | |||
GenBank | AP004791 | 0.0 | AP004791.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0491D10. | |||
GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015642670.1 | 1e-177 | nuclear transcription factor Y subunit B-10-like | ||||
TrEMBL | Q5VNF4 | 1e-176 | Q5VNF4_ORYSJ; HAP3 subunit of HAP complex | ||||
STRING | OS06T0285200-01 | 1e-177 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP201 | 38 | 331 | Representative plant | OGRP168 | 17 | 170 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47670.2 | 5e-52 | nuclear factor Y, subunit B6 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os06g17480.1 |
Entrez Gene | 4340772 |
Publications ? help Back to Top | |||
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