PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g17410.1
Common NameLOC4340769, Os06g0284500, OSNPB_060284500, P0491D10.21
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family Dof
Protein Properties Length: 290aa    MW: 28832.9 Da    PI: 7.4335
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g17410.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof122.11.9e-382884460
            zf-Dof  4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60
                      ++++cprCds+ntkfCyynny+lsqPr+fCkaCrryWtkGG lrnvPvGgg+rk k+
  LOC_Os06g17410.1 28 EEVRCPRCDSSNTKFCYYNNYNLSQPRHFCKACRRYWTKGGLLRNVPVGGGCRKPKR 84
                      6789**************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027019.2E-332984IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.0873084IPR003851Zinc finger, Dof-type
ProDomPD0074782.0E-233179IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103268IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009047anatomystem
PO:0007010developmental stagewhole plant fruit ripening stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MQEFHPVPGL AGRLFGGAAA AAAVAAVEEV RCPRCDSSNT KFCYYNNYNL SQPRHFCKAC  60
RRYWTKGGLL RNVPVGGGCR KPKRPAPPPS SSFTGGGGGG GGCGHRDSKS ARSAGGGGDG  120
SGSTASATAT PAAAPASSNT LSAAVSQPSS VDALSPPPAP MFADQATAFA SLFAPPPPPP  180
SQALPAFASF TAQPKAEEDV ADAPALAATE QHRSSSAASF AAHSISPPFA AARSSDGPAA  240
AAAAAAADWA PPTAVLDAGM FDLAGAIGGD TSYWNAASWT DHDGTIYLP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.809360.0leaf| panicle
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ5VNE4
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g17410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g17410
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0047910.0AP004791.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0491D10.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641761.10.0dof zinc finger protein 4-like
TrEMBLQ5VNE40.0Q5VNE4_ORYSJ; Os06g0284500 protein
STRINGOS06T0284500-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64963050
Representative plantOGRP3817445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07640.14e-29Dof family protein