PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os06g15480.2 | ||||||||
Common Name | OJ1001_B06.18, Os06g0265400, OSNPB_060265400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bZIP | ||||||||
Protein Properties | Length: 386aa MW: 42332.7 Da PI: 6.6314 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 32.6 | 1.7e-10 | 94 | 134 | 4 | 44 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44 k +rr+++NReAAr+sR RKka+i++Le +L ++ LOC_Os06g15480.2 94 QKMQRRLAQNREAARKSRMRKKAYIQQLESSRSKLMHLEQE 134 589**************************977777655544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.8E-7 | 91 | 189 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.588 | 93 | 137 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.5E-7 | 95 | 135 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.25E-7 | 95 | 138 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 4.1E-8 | 95 | 139 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 98 | 113 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 1.8E-30 | 179 | 255 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009049 | anatomy | inflorescence | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 386 aa Download sequence Send to blast |
MAAHQGMAAA TAADRFCLPR MAAAAAAASQ VENWGDSGVI VSSPFTDDTS TDLDDSADKH 60 HLHALVGGGD GGDDAGEQRG ADSSAVSKER RGDQKMQRRL AQNREAARKS RMRKKAYIQQ 120 LESSRSKLMH LEQELQRARQ QGIFIATGGS GDHGHSIGGN GTLAFDLEYA RWLDEHQRHI 180 NDLRVALNAQ MSDDELCELV DAVMMHYDQV FRLKSFATKS DVFHVLSGMW MSPAERFFMW 240 LGGFRSSELL KVLASHLEPL TDQQLMGICN LQQSSQQAED ALSQGMEALQ QTLGDTLVSA 300 AATVVSGGGG ADNVTNYMGQ MAIAMAKLTT LENFLRQADL LRHQTLQQMH RILTTRQAAR 360 ALLVISDYFS RLRALSSLWL ARPRD* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.56267 | 0.0 | panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32994928 | 0.0 | ||||
Expression Atlas | Q5Z6N9 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os06g15480.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os06g15480 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK109719 | 0.0 | AK109719.1 Oryza sativa Japonica Group cDNA clone:002-146-A04, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015642107.1 | 0.0 | transcription factor TGAL3-like isoform X1 | ||||
Refseq | XP_025881815.1 | 0.0 | transcription factor TGAL3-like isoform X2 | ||||
Swissprot | Q5Z6N9 | 0.0 | TGAL3_ORYSJ; Transcription factor TGAL3 | ||||
TrEMBL | I1Q1E6 | 0.0 | I1Q1E6_ORYGL; Uncharacterized protein | ||||
STRING | OS06T0265400-01 | 0.0 | (Oryza sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68640.1 | 1e-120 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os06g15480.2 |
Publications ? help Back to Top | |||
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