PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g15480.1
Common NameOJ1001_B06.18, Os06g0265400, OSNPB_060265400
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bZIP
Protein Properties Length: 386aa    MW: 42332.7 Da    PI: 6.6314
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g15480.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.61.7e-1094134444
                       XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44 
                        k +rr+++NReAAr+sR RKka+i++Le    +L    ++
  LOC_Os06g15480.1  94 QKMQRRLAQNREAARKSRMRKKAYIQQLESSRSKLMHLEQE 134
                       589**************************977777655544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.8E-791189IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.58893137IPR004827Basic-leucine zipper domain
PfamPF001701.5E-795135IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.25E-795138No hitNo description
Gene3DG3DSA:1.20.5.1704.1E-895139No hitNo description
PROSITE patternPS00036098113IPR004827Basic-leucine zipper domain
PfamPF141441.8E-30179255IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009049anatomyinflorescence
PO:0001083developmental stageinflorescence development stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MAAHQGMAAA TAADRFCLPR MAAAAAAASQ VENWGDSGVI VSSPFTDDTS TDLDDSADKH  60
HLHALVGGGD GGDDAGEQRG ADSSAVSKER RGDQKMQRRL AQNREAARKS RMRKKAYIQQ  120
LESSRSKLMH LEQELQRARQ QGIFIATGGS GDHGHSIGGN GTLAFDLEYA RWLDEHQRHI  180
NDLRVALNAQ MSDDELCELV DAVMMHYDQV FRLKSFATKS DVFHVLSGMW MSPAERFFMW  240
LGGFRSSELL KVLASHLEPL TDQQLMGICN LQQSSQQAED ALSQGMEALQ QTLGDTLVSA  300
AATVVSGGGG ADNVTNYMGQ MAIAMAKLTT LENFLRQADL LRHQTLQQMH RILTTRQAAR  360
ALLVISDYFS RLRALSSLWL ARPRD*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.562670.0panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329949280.0
Expression AtlasQ5Z6N9-
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g15480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g15480
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1097190.0AK109719.1 Oryza sativa Japonica Group cDNA clone:002-146-A04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642107.10.0transcription factor TGAL3-like isoform X1
RefseqXP_025881815.10.0transcription factor TGAL3-like isoform X2
SwissprotQ5Z6N90.0TGAL3_ORYSJ; Transcription factor TGAL3
TrEMBLI1Q1E60.0I1Q1E6_ORYGL; Uncharacterized protein
STRINGOS06T0265400-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48638185
Representative plantOGRP7221667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68640.11e-120bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]