PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LOC_Os06g14710.1

Common Name

LOC107275396, Os06g0258500, OsJ_20873, OSNPB_060258500, P0603C10.31

Organism

Oryza sativa subsp. japonica

Taxonomic ID

39947

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

MYB_related

Protein Properties

Length: 143aa MW: 16352.7 Da PI: 11.7075

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LOC_Os06g14710.1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.5	8.4e-15	37	85	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT+e+d l ++ ++G+++W+++a+ m+ +R++ qc++rw+++l LOC_Os06g14710.1 37 AWTPELDAVLERLAMEHGSRHWRRVAAQMPrhsSRRSPAQCRDRWRDHL 85 7*********************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.738	30	89	IPR017930	Myb domain
SMART	SM00717	1.9E-8	34	87	IPR001005	SANT/Myb domain
Pfam	PF00249	5.9E-14	37	85	IPR001005	SANT/Myb domain
CDD	cd00167	9.86E-9	37	85	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.7E-16	37	102	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.74E-16	37	108	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 143 aa Download sequence Send to blast
MDMELSSSSS AASVFASSSA TSPPLGRCVV RIRLPPAWTP ELDAVLERLA MEHGSRHWRR 60 VAAQMPRHSS RRSPAQCRDR WRDHLARDVF HRPFTADDDA ELALLCLRLD DGRSSRAVKR 120 RWRELRKSDA FLGKLWRRPL SH*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	115	120	RAVKRR

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	Q652S6

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LOC_Os06g14710.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
RiceGE	Os06g14710

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005527	0.0	AP005527.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0603C10.
GenBank	AP014962	0.0	AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015642267.1	9e-96	transcription factor MYB44
TrEMBL	Q652S6	2e-94	Q652S6_ORYSJ; Myb-like transcription factor-like
STRING	OS06T0258500-00	4e-95	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8360	13	46
Representative plant	OGRP10428	3	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	4e-09	myb domain protein 73

Link Out ? help Back to Top
Phytozome	LOC_Os06g14710.1
Entrez Gene	107275396