PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os06g14700.1 | ||||||||
Common Name | LOC107275562, Os06g0258200, OsJ_20871, OSNPB_060258200, P0603C10.27 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MYB | ||||||||
Protein Properties | Length: 179aa MW: 19948.7 Da PI: 11.6719 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.2 | 5.1e-15 | 40 | 85 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +WT+eEd l ++ + G+++W+++a+ m+ +R++ qc++rw+++l LOC_Os06g14700.1 40 AWTPEEDAALERLAVENGSRHWRRVAAQMPRKRSPVQCRDRWRDHL 85 6*****************************99***********986 PP | |||||||
2 | Myb_DNA-binding | 22.5 | 2.6e-07 | 93 | 136 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwq 45 + T+ +d+ l ++v + Ggg +Wk I+r + gR+ ++k rw LOC_Os06g14700.1 93 PYTAADDDELTRLVLRPGGGgdRWKDISRAVH-GRSSRSVKRRWM 136 679999999*********99************.***********7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.915 | 33 | 89 | IPR017930 | Myb domain |
SMART | SM00717 | 6.2E-12 | 37 | 87 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.21E-20 | 39 | 135 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.0E-14 | 40 | 85 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-16 | 40 | 97 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.77E-12 | 40 | 85 | No hit | No description |
SMART | SM00717 | 0.017 | 90 | 141 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.07E-4 | 93 | 138 | No hit | No description |
PROSITE profile | PS50090 | 7.143 | 93 | 139 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-7 | 98 | 137 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MAMMEPSSSS SSSTASAVTP SSAPPSGRCC VVLRIKLPAA WTPEEDAALE RLAVENGSRH 60 WRRVAAQMPR KRSPVQCRDR WRDHLARDVF HRPYTAADDD ELTRLVLRPG GGGDRWKDIS 120 RAVHGRSSRS VKRRWMEIGT SDELLRKLAP PVIDAVSGHG GGRRRLMRPN QAFGWRRC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3osf_A | 2e-15 | 32 | 140 | 1 | 108 | MYB21 |
3osf_D | 2e-15 | 32 | 140 | 1 | 108 | MYB21 |
3osg_A | 2e-15 | 32 | 140 | 1 | 108 | MYB21 |
3osg_D | 2e-15 | 32 | 140 | 1 | 108 | MYB21 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q652S8 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os06g14700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os06g14700 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005527 | 0.0 | AP005527.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0603C10. | |||
GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015642266.1 | 1e-125 | transcription factor MYB44 | ||||
TrEMBL | I1Q1C3 | 1e-124 | I1Q1C3_ORYGL; Uncharacterized protein | ||||
TrEMBL | Q652S8 | 1e-124 | Q652S8_ORYSJ; Myb-like transcription factor-like | ||||
STRING | ORGLA06G0093600.1 | 1e-125 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8360 | 13 | 46 | Representative plant | OGRP10428 | 3 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67300.1 | 3e-17 | myb domain protein r1 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os06g14700.1 |
Entrez Gene | 107275562 |