PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os06g14670.1 | ||||||||
Common Name | LOC4340683, Os06g0258000, OsJ_20870, OSNPB_060258000, P0603C10.20, P0624H09.43 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MYB | ||||||||
Protein Properties | Length: 268aa MW: 29556.4 Da PI: 4.8493 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.7 | 4.1e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv +G +W+ +++ g+ R++k+c++rw +yl LOC_Os06g14670.1 14 KGPWTAEEDQKLVAFLLTHGHCCWRVVPKLAGLLRCGKSCRLRWTNYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 53.3 | 6.2e-17 | 71 | 111 | 5 | 47 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 + +E+ l +d+++qlG++ W++Ia++++ gRt++++k++w+++ LOC_Os06g14670.1 71 SDDEERLVIDLHAQLGNR-WSKIAARLP-GRTDNEIKNHWNTH 111 899***************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.0E-21 | 5 | 62 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.227 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.03E-27 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.3E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.45E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 27.503 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-24 | 63 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.55E-12 | 71 | 112 | No hit | No description |
Pfam | PF00249 | 1.1E-14 | 71 | 111 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009066 | anatomy | anther | ||||
PO:0001004 | developmental stage | anther development stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence Send to blast |
MGRQPCCDKV GLKKGPWTAE EDQKLVAFLL THGHCCWRVV PKLAGLLRCG KSCRLRWTNY 60 LRPDLKRGLL SDDEERLVID LHAQLGNRWS KIAARLPGRT DNEIKNHWNT HIKKKLRKMG 120 IDPVTHQPLE PPRPPPREQD ATPPPPPPPP QEIEESEEEE QEPSPLIEPH EITAPPPAAA 180 AEAATSNCSV SPASVLSPSC SSSASAASAV DVAEWPEPMY MFGMDGIMDV GWNGLISGAG 240 VDVDVDVDPF DHYYHDASFD DQDVWII* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-30 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.55096 | 0.0 | panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 284431795 | 0.0 | ||||
Expression Atlas | Q652E6 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in chalaza of mature seeds, cotyledons, rosette leaves, cauline leaves, veins of stems, mature siliques, sepals and styles. Expressed at low levels in roots. {ECO:0000269|PubMed:23660402}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os06g14670.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os06g14670 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ940217 | 0.0 | FJ940217.1 Oryza sativa Japonica Group clone KCS132B07 Myb related transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015642105.1 | 0.0 | protein ODORANT1 | ||||
Swissprot | Q9C7U7 | 3e-84 | MYB20_ARATH; Transcription factor MYB20 | ||||
TrEMBL | Q652E6 | 0.0 | Q652E6_ORYSJ; Myb related transcription factor | ||||
STRING | OS06T0258000-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP79 | 38 | 563 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66230.1 | 1e-81 | myb domain protein 20 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os06g14670.1 |
Entrez Gene | 4340683 |
Publications ? help Back to Top | |||
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