PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g14190.1
Common NameLOC4340659, P0046H10.13
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NF-X1
Protein Properties Length: 962aa    MW: 103886 Da    PI: 7.9232
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g14190.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X121.84.1e-07231248118
          zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                       CG+H Cq +CH+GpC++C
  LOC_Os06g14190.1 231 CGNHACQDICHPGPCGEC 248
                       ****************** PP
2zf-NF-X122.91.8e-07289306118
          zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                       CG H+C+ +CHeG+CppC
  LOC_Os06g14190.1 289 CGVHRCKVTCHEGDCPPC 306
                       ****************** PP
3zf-NF-X116.61.7e-05384402119
          zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                       CG+H Cq lCH G CppC 
  LOC_Os06g14190.1 384 CGQHGCQLLCHSGHCPPCL 402
                       ******************6 PP
4zf-NF-X118.93.2e-06494510117
          zf-NF-X1   1 CGkHkCqklCHeGpCpp 17 
                       CG+H C++ CH+ pC+p
  LOC_Os06g14190.1 494 CGMHACNRSCHPSPCDP 510
                       ***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004380.023112130IPR000967Zinc finger, NF-X1-type
PfamPF014227.1114129IPR000967Zinc finger, NF-X1-type
CDDcd060081.07E-11157205No hitNo description
PfamPF014220.014167184IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0019167186IPR000967Zinc finger, NF-X1-type
CDDcd060085.59E-8221264No hitNo description
PfamPF014221.1E-4231248IPR000967Zinc finger, NF-X1-type
SMARTSM004382.3E-4231250IPR000967Zinc finger, NF-X1-type
CDDcd060083.81E-13279327No hitNo description
PfamPF014224.7E-6289306IPR000967Zinc finger, NF-X1-type
SMARTSM004380.001289308IPR000967Zinc finger, NF-X1-type
CDDcd060083.90E-8374426No hitNo description
PfamPF014220.0015384401IPR000967Zinc finger, NF-X1-type
SMARTSM004387.2E-4384403IPR000967Zinc finger, NF-X1-type
SMARTSM004380.62441459IPR000967Zinc finger, NF-X1-type
PfamPF014220.0021494510IPR000967Zinc finger, NF-X1-type
SMARTSM004380.029494529IPR000967Zinc finger, NF-X1-type
PfamPF014227.7531557IPR000967Zinc finger, NF-X1-type
SMARTSM004380.16538559IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000122Biological Processnegative regulation of transcription from RNA polymerase II promoter
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001078Molecular Functiontranscriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 962 aa     Download sequence    Send to blast
MICYDMVRRS APVWSCGSCF SIFHLPCIRK WARSPASAAD ASDPDSSWRC PGCQSVHAVP  60
ARELAYTCFC GRRREPPNDL FLTPHSCGEP CSKPLEKADP AVKADDAAAT RCPHVCVLQC  120
HPGPCPPCKA FAPDRLCPCG KQTIVRRCAD RTTPVTCGQR CDRLLPCRRH RCEKVCHTGP  180
CGDCNVLISA RCFCGKKTET LLCGEMELKG NLSEKDGVFS CSEACSHMLS CGNHACQDIC  240
HPGPCGECEL MPGKVTACHC GKTRLLEKRA SCLDPIPTCD KVCDKKLPCG VHRCKVTCHE  300
GDCPPCVVRV EQRCRCGSSG QMVECYKVLE EEFRCNKPCG RKKNCGRHRC SECCCPLSKP  360
LARLEGGNWD PHLCQIPCGK KLRCGQHGCQ LLCHSGHCPP CLETIFNDLT CACGRTSIPP  420
PLPCGTPTPS CPHQCLVPQP CGHPATHQCH FGDCPPCVVP VMRECIGGHV VLRNIPCGSK  480
DIRCNQPCGK NRQCGMHACN RSCHPSPCDP PPANGDASSS TGGRASCGQV CGAPRRECKH  540
TCTAPCHPSS PCPDLRCEFP MTIACSCGRI TATVPCSAGG TANGDNMFEV SIIQKLPMPL  600
QPVESDGRRV PLGQRKLSCD EDCAKMERKR VLAEAFDITP PNLDALHFGE NSNASDLLSD  660
LFRREPKWVM AIEERCKFLV LGKTRGNSSG NLKVHVFCHM TKDKRDAIRV IADRWKLSVQ  720
AAGWEPKRFI TIHPTPKSKA PARILGSKPG VFVAASHPFF DPLVDMDPRL VVAMLDLPRD  780
ADVSALVLRF GGECELVWLN DKNAVAVFND PARAATALRR LDYGSAYQGA AVFLPSSSAQ  840
PGNVWVAGQK DGVAATKSSA NPWKKATASE PDPSSGDWTG VLGQAPGSVW RRGGDTVAQV  900
MGTSNRWNAL ESDAATSSRP VEESKPAPRT DAVSSAGPST APPVSKMQPE VEVDDWEEAC  960
E*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.176650.0callus| flower| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO293675300.0
Expression AtlasQ652W3-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaves, buds, flowers and siliques. {ECO:0000269|PubMed:16905136}.
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g14190.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g14190
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0055180.0AP005518.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0046H10.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643844.10.0NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLQ652W30.0Q652W3_ORYSJ; Putative TF-like protein
STRINGONIVA06G11110.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61303543
Representative plantOGRP39501420
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1
Publications ? help Back to Top
  1. Cooper B, et al.
    A network of rice genes associated with stress response and seed development.
    Proc. Natl. Acad. Sci. U.S.A., 2003. 100(8): p. 4945-50
    [PMID:12684538]