PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g13900.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 787aa    MW: 89880.6 Da    PI: 8.1954
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g13900.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR170.63.6e-22133222290
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                        Yn+YAk+vGFs+++++s+ks +nge  k  fvC+k g +e++ ++    k+r+++ + +  Cka++++k++  ++wev+++++eH+H+l+
  LOC_Os06g13900.1 133 HYNRYAKRVGFSIKINTSRKSAKNGERDKVMFVCNKCGPEEKTGEAcpPPKKRKRSRTRQAACKARMTMKRK-GARWEVIQFVEEHTHPLV 222
                       6****************************************999998767777788888899********99.****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-19133222IPR004330FAR1 DNA binding domain
PfamPF105518.7E-33344438IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 787 aa     Download sequence    Send to blast
MDFDLNSIPE LVSGENEPPV HHLLVDDEDK SETYFPINPT DTRMEIPTIN LDDTFDYENM  60
YTAGDAGSLQ AHNVANDEMQ VFEEMSDHAD TMHTSVATGA TTATANTISR YSVRTQVPYL  120
TLTFNSEEEA RAHYNRYAKR VGFSIKINTS RKSAKNGERD KVMFVCNKCG PEEKTGEACP  180
PPKKRKRSRT RQAACKARMT MKRKGARWEV IQFVEEHTHP LVRKFSLKKF LRSHRAIPKE  240
EKDFITMLHG VNLSASRIMQ LMSELYGGAR NVPYTRKDIS NFKSKLGSEY RCRDIPETIA  300
HFEEIKKDDP NFFYKIQLDK EDRVQNIFWV DGAARNAYKD FKDCISFDCT YMTNMYNMPC  360
APFIGINRHG QSIQLGCGFL RNEKTETFVW LFQEFLEAME GVEPINIITD QDLAMKAAIA  420
LVFPHAKHRN CRWHIMQNAQ KKIGHILDHD KALCDAFNDC LNNSWTEQEF DAKWDAMLTV  480
LGPSILYALF LPFPPDYSTD IYNFFLQYKK IQEKITVATD QNEFEAEETI PSMWANYPMK  540
TKALEVYTRP IFNRFQKELI ASTSYKLTRT SENMYLVEPN GGPVRNYGSR TFILAANVLD  600
RIYNCECCKF ERDGILWCHV LKVMASDFVG QVSDIPEHYI LPRWTMVKEP ELPPVTSIGE  660
QMQLPPESLK LISYTNLCTK FTQIAKDASS NEKAYRMALQ RMSSMTDDLA AMKQSRKKQK  720
KAQPAPADPA RGVSDIPSAS TNPTLQINDP PIIQKQGRPV STRRKPGVHA KASKTSVRKG  780
LASTGK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182187KKRKRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g13900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g13900
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0046510.0AP004651.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0091G06.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8B4I10.0B8B4I1_ORYSI; Uncharacterized protein
STRINGOPUNC09G00260.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-87FAR1-related sequence 5