PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os06g13740.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | FAR1 | ||||||||
Protein Properties | Length: 839aa MW: 95943.9 Da PI: 7.0684 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 43.8 | 8.3e-14 | 168 | 252 | 2 | 85 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 Yn+YAk+vGFs+++++s+ks ++ge k fvC+k g +e++ + k+r+++ + + ka+++vk++ k+ ++k+ H LOC_Os06g13740.1 168 HYNRYAKRVGFSIKINTSRKSAKDGERDKVMFVCNKCGPEEKTGEVcPPKKRKRSRTRQAAWKARMTVKRKGARKFSLKKFLRSH 252 6**************************************99999884444555555556788*****************999988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.5E-11 | 168 | 252 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 2.3E-32 | 362 | 456 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 8.716 | 644 | 680 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 5.7E-5 | 654 | 677 | IPR007527 | Zinc finger, SWIM-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 839 aa Download sequence Send to blast |
MDFDLNSIPE LVSGENEPPV HHLLVDDKDK SETYFPINPT DTSMEIPAIN LDDTFDFETM 60 YTAGDAGSLQ AHNVANDEMQ VFEANDEMQI FEGDYEMQVF EEMSDRGDTM HTSVATGATT 120 ATANTISSED SRTDDSEAQS APSQDIPCST QVPYLTLTFN SEEEARAHYN RYAKRVGFSI 180 KINTSRKSAK DGERDKVMFV CNKCGPEEKT GEVCPPKKRK RSRTRQAAWK ARMTVKRKGA 240 RKFSLKKFLR SHRAIPKEEK DFITMLHGVN LSAGRIMQLM SELYGGARNV PYTRKDISNF 300 KSKLGSEYRC RDIPETIAHF EEIKKDDPNF FYKIQLDKED RVQNIFWVDG AARNAYKDFK 360 DCISFDCTYM TNMYNMPCAP FIGLNKHGQS IQLGCGFLRN EKTETFVWLF QAFLEAMEGV 420 EPTNIITDQD LAMKAAIALV FPHAKHRNCH WHIMQNAQKK IGHILDHDKA LCDAFNDCLD 480 NSWTEQEFDA KWDAMLTTYH LQDNEHFRHL WEMRQCWVPV YFMHCFFPFL QTTARSEGFN 540 AVLKRYVNPQ NSIYNFFLQY KKIQEKITVA TDQNEFEAEE TIPSMWGNYP METKALEVYT 600 RPIFNRFQKE LIASTSYKLT RTSENMYLVE PNGGPVRNYG SRAFIVAANV LDRTYNCECC 660 KFERDGILCC HVLKVMTSDF VGQVSDIPEH YILPRWTMVK EPELPPVTSI GEQMQLPPES 720 LKLIRYTNLC TKFTQIAKDA SSNEKAYRMA LQRMSSMTDD LAAMKQSRKK QKKAQPAPAD 780 PARGISDIPS ASTNPTLQIN DPPIIQKQGR PVSTRRKPGV HAKASKTSVR KGLASTEK* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 216 | 221 | KKRKRS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os06g13740.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os06g13740 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004027 | 0.0 | AP004027.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OJ1136_C11. | |||
GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | B8B4I1 | 0.0 | B8B4I1_ORYSI; Uncharacterized protein | ||||
STRING | OPUNC09G00260.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 | Representative plant | OGRP13611 | 2 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-105 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os06g13740.1 |