PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os06g11940.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ERF | ||||||||
Protein Properties | Length: 224aa MW: 24191 Da PI: 4.6858 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.4 | 3.1e-17 | 30 | 80 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ykGVr + +g+WvAeIr p++ r r++lg+++t+e+Aa+a +aa l+g LOC_Os06g11940.1 30 KKYKGVRLRQ-WGKWVAEIRLPNS---RERVWLGSYDTPEKAARAFDAAFVFLRG 80 59*****998.**********933...5********************9887777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.25E-23 | 30 | 94 | No hit | No description |
PROSITE profile | PS51032 | 21.377 | 31 | 92 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.3E-27 | 31 | 98 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.03E-18 | 31 | 93 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.7E-10 | 31 | 75 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-26 | 31 | 94 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.2E-9 | 32 | 43 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.2E-9 | 54 | 70 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MAYISTSSTD HSLSCMRMQT KNTAAPAPEK KYKGVRLRQW GKWVAEIRLP NSRERVWLGS 60 YDTPEKAARA FDAAFVFLRG AGAADAAGLN FPDSPLPVVA RTRDLREVYA FAVSHANRPP 120 PVAGETAATA LAAMAALEHN EVRENIAPSS PLSAVQVAAP PAGSFDWSQL MANSPPLYSP 180 IVIGSHAYDD LAVWPTTQPV EEFSEEDNEN EGATSDELWS FDV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-13 | 18 | 92 | 1 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os06g11940.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os06g11940 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005545 | 0.0 | AP005545.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0638H11. | |||
GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025882388.1 | 1e-150 | ethylene-responsive transcription factor ERF018-like | ||||
TrEMBL | B9FS97 | 1e-147 | B9FS97_ORYSJ; Uncharacterized protein | ||||
STRING | OBART06G07840.1 | 1e-147 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP861 | 32 | 144 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19210.1 | 1e-29 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os06g11940.1 |