PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g10780.1
Common NameP0021C04.8
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 278aa    MW: 29197.5 Da    PI: 4.9661
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g10780.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.52.9e-1775123355
               AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       ykGVr ++ +g+Wv+eIr ps+   ++r++lg++ tae Aa+a++aa ++l+g
  LOC_Os06g10780.1  75 YKGVRMRS-WGSWVSEIRAPSQ---KTRIWLGSYSTAEAAARAYDAALLCLKG 123
                       9****998.**********964...6************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.109.4E-2874132IPR001471AP2/ERF domain
SMARTSM003809.0E-3274138IPR001471AP2/ERF domain
PROSITE profilePS5103221.73374132IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-1774134IPR016177DNA-binding domain
PRINTSPR003677.2E-97586IPR001471AP2/ERF domain
PfamPF008472.1E-1075123IPR001471AP2/ERF domain
CDDcd000182.42E-1575133No hitNo description
PRINTSPR003677.2E-997113IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MEGVQHMEAT SKCQTRHTHT EQQQQQQQHQ TARHNERSLA FQAIKRFDMV KTAASNGAAA  60
ARRVGGGGDG KRAAYKGVRM RSWGSWVSEI RAPSQKTRIW LGSYSTAEAA ARAYDAALLC  120
LKGSAAADLN FPVRLPFDLP AAAMSPKSIQ RVAAAAAANA NANASSSCSA AVFAGVDDSG  180
GASASEASTP ACSSSDGAAS PSPVSSPETV ISDVDVDYSL LADIEAFFQS PKCMEYAMMD  240
PCSAFFAPPP PPAMAMEEEC GWEEEGDIAL WSFSSLD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1265132472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ69TX6
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g10780.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g10780
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0046870.0AP004687.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0021C04.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881784.11e-163ethylene-responsive transcription factor ERF014
TrEMBLQ69TX60.0Q69TX6_ORYSJ; Putative DRE binding factor 2
STRINGONIVA06G08290.11e-127(Oryza nivara)
STRINGOBART06G07000.11e-127(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31973469
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G44830.11e-23ERF family protein