PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g10710.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GeBP
Protein Properties Length: 297aa    MW: 31671.7 Da    PI: 11.0024
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g10710.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57345.52.2e-1496183698
            DUF573   6 lwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                       +w++ De++lL + + f+a++g  p   d+ a++e +++sis+++ +  +  K++r K Kf +   +       + +++hd+ +  ls  +Wg
  LOC_Os06g10710.1  96 VWNDADEVALLTAAVAFRARNGFAPRLpDMGALFESLRGSISSHIDQAKVYYKLKRNKSKFLHAPPQ------ATTTTPHDRRVRALSAELWG 182
                       8**********************98877**********************************99998......8899***************9 PP

            DUF573  98 s 98 
                       s
  LOC_Os06g10710.1 183 S 183
                       5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.4E-1396182IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MSSSRRPPAR AAATEAAADA ALPLHPSSPR SKKRSSSSRR AAAGDRRPAA RAPNPSLSPR  60
GGGGAPSRKS ERRRRPRSLA MAVHGHASTS GGPGLVWNDA DEVALLTAAV AFRARNGFAP  120
RLPDMGALFE SLRGSISSHI DQAKVYYKLK RNKSKFLHAP PQATTTTPHD RRVRALSAEL  180
WGSELAPPAV EGDADAAEAA DERDAEEGYI GGNLHVSVRL PVVSEVLGDY WRKNGRVLSG  240
VSLERGLALV GPEEGRMAEA KWKRQLEVET QTQGRRHDLA KEVCAMLIDA VRGLGP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.508820.0callus| leaf| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1166415460.0
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g10710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g10710
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0047580.0AP004758.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0664C05.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCT8305130.0CT830513.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA036D18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641305.10.0formin-like protein 5
TrEMBLA0A0E0PUY20.0A0A0E0PUY2_ORYRU; Uncharacterized protein
STRINGORUFI06G07170.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26822763
Representative plantOGRP1273145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00250.14e-10DNA-binding storekeeper protein-related transcriptional regulator