PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g10470.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 262aa    MW: 26491.6 Da    PI: 7.1169
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g10470.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72.1e-056486123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C++C + F+++  L  H++ H
  LOC_Os06g10470.1 64 FECHYCRRNFPTSQALGGHQNAH 86
                      89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.71E-66192No hitNo description
PfamPF139124.7E-66388IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.3236491IPR007087Zinc finger, C2H2
PROSITE patternPS0002806686IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MAAPHGMHGV AAAAPDATIR LFGRDVVSND DAVVVVVDGQ LPKEEAEEEA GGGAAAAAGE  60
TRRFECHYCR RNFPTSQALG GHQNAHKRER QHARRAHLEA SLAAAHYLGQ SAHLVYGGAA  120
LFGYGGHAAA VSPQYGPVWA SSAVAPPGLY ATSMGMARPA AYGAGVDVSA LWRASSSSSS  180
SPPMMGSGGG GAFGTVAGGG RHGEAAAAAL VGCRAGKDEN VVMSVVTSLP SLPSWQLPAP  240
EKMGRSELGQ EAGVVSLELR L*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.507914e-42leaf| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329787874e-42
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g10470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g10470
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0047540.0AP004754.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0529B09.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882184.10.0zinc finger protein 8-like
TrEMBLB8B3X20.0B8B3X2_ORYSI; Uncharacterized protein
STRINGORUFI06G06970.10.0(Oryza rufipogon)
STRINGONIVA06G08040.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP8341720
Representative plantOGRP8215137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41940.11e-18zinc finger protein 8