PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os06g09810.1 | ||||||||
Common Name | B1172G12.14, OsJ_20455 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ERF | ||||||||
Protein Properties | Length: 208aa MW: 21805.4 Da PI: 4.6033 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.4 | 3.2e-17 | 29 | 78 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +ykGVr + +g+W+AeIr ps+ + r++lg+++t+e+Aa+a +aa +l+g LOC_Os06g09810.1 29 KYKGVRLRQ-WGKWAAEIRLPSS---CERIWLGSYDTPEKAARAFDAAFICLRG 78 8*****998.**********965...7*********************999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 5.2E-26 | 28 | 90 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.825 | 29 | 88 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.05E-24 | 29 | 90 | No hit | No description |
SMART | SM00380 | 7.9E-29 | 29 | 94 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-19 | 29 | 89 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.8E-9 | 29 | 78 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.1E-9 | 30 | 41 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.1E-9 | 52 | 68 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MEPVSFMQKS AAAAADGGSA AQAAAERRKY KGVRLRQWGK WAAEIRLPSS CERIWLGSYD 60 TPEKAARAFD AAFICLRGVQ AIAGLNFPES PPPPTAARTG DLREVYAFAV SHANRPSAEA 120 APADIVVPAQ VATEESDGVV RGNAAPPPVQ VAAGSLDWSQ FMANPPPMYS PTATAGSQAM 180 WPVTAPAAEA DGEDDELATT CRWSFDA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-15 | 24 | 89 | 9 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q69K66 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os06g09810.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os06g09810 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP006056 | 0.0 | AP006056.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:B1172G12. | |||
GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025882388.1 | 4e-54 | ethylene-responsive transcription factor ERF018-like | ||||
TrEMBL | Q69K66 | 1e-146 | Q69K66_ORYSJ; AP2 domain transcription factor-like | ||||
STRING | ORGLA06G0057500.1 | 1e-145 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP861 | 32 | 144 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19210.1 | 1e-30 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os06g09810.1 |