PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os06g09790.1 | ||||||||
Common Name | B1172G12.12 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ERF | ||||||||
Protein Properties | Length: 210aa MW: 23022.6 Da PI: 4.6622 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.1 | 3.8e-17 | 14 | 64 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ykGVr + +g+WvAeIr p++ rkr++lg++ t+e+Aa+a +aa +l+g LOC_Os06g09790.1 14 TRYKGVRLRQ-WGKWVAEIRLPNS---RKRIWLGSYYTPEKAARAFDAAFICLRG 64 68*****998.**********933...5*********************999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.8E-10 | 14 | 64 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.98E-25 | 14 | 76 | No hit | No description |
SuperFamily | SSF54171 | 2.94E-18 | 15 | 74 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.9E-29 | 15 | 80 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.232 | 15 | 74 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-25 | 15 | 75 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-8 | 16 | 27 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-8 | 38 | 54 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MQANTTQPAP EKETRYKGVR LRQWGKWVAE IRLPNSRKRI WLGSYYTPEK AARAFDAAFI 60 CLRGGEAIAG LNFTESPPAV VARTTDPREV LAFATSHANL LSLLDAAIAQ EEEAHSFKKE 120 EEAQVEEKTA EESSDVVRAN AAPPPPVQVA GGSFDWSQLP LYSPTTTPAA EHWEEDNVEG 180 DIPVCSEISV ETSSNSRYIG VVFQMHSYG* |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q69K68 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os06g09790.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os06g09790 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP006056 | 0.0 | AP006056.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:B1172G12. | |||
GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012614 | 0.0 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | Q69K68 | 1e-152 | Q69K68_ORYSJ; AP2 domain transcription factor-like | ||||
STRING | ORGLA06G0057400.1 | 1e-150 | (Oryza glaberrima) | ||||
STRING | OBART06G06230.1 | 1e-148 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP861 | 32 | 144 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74930.1 | 2e-31 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os06g09790.1 |