PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g09717.1
Common NameB1172G12.5, LOC107275374, Os06g0197200, Os06g0197600, OSNPB_060197200, OSNPB_060197600, P0528E04.39, P0528E04.44
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 208aa    MW: 22187.5 Da    PI: 4.5266
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g09717.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.91.2e-181060155
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      ++y+GVr +k +g+Wv+eIr p++   r r++lg+++t+eeAa+a +aa  +l+g
  LOC_Os06g09717.1 10 TKYRGVRLRK-WGKWVSEIRLPNS---RERIWLGSYDTPEEAARAFDAAFVCLRG 60
                      69******99.**********933...5*********************999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.5E-111055IPR001471AP2/ERF domain
CDDcd000187.89E-231072No hitNo description
SuperFamilySSF541713.92E-181163IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.7E-261172IPR001471AP2/ERF domain
SMARTSM003801.5E-281178IPR001471AP2/ERF domain
PROSITE profilePS5103221.2321172IPR001471AP2/ERF domain
PRINTSPR003674.8E-101223IPR001471AP2/ERF domain
PRINTSPR003674.8E-103450IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020048anatomymicrospore
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MSSSSSATTT KYRGVRLRKW GKWVSEIRLP NSRERIWLGS YDTPEEAARA FDAAFVCLRG  60
GGEAAGNGIN FPGSPPAVAR TSDPQEVYAA AVSHANNRPP PPPSARATSS ALPWEEAPVV  120
AAQEAAADMA PDVVVLPSSP VNVLAAAGSF EYWSQQPLYS PTAASLDLQR WMTAAAAAEE  180
SIMEDDDDEG TSDGLWSFHY SPTRSKW*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ69Y93
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g09717.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g09717
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0035100.0AP003510.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0528E04.
GenBankAP0060560.0AP006056.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:B1172G12.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642230.11e-148ethylene-responsive transcription factor ERF039
RefseqXP_025882167.11e-148ethylene-responsive transcription factor ERF039-like
TrEMBLA2YAA71e-147A2YAA7_ORYSI; Uncharacterized protein
TrEMBLQ69Y931e-147Q69Y93_ORYSJ; AP2 domain transcription factor-like
STRINGORUFI06G06480.11e-146(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.11e-33ERF family protein