PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os06g09420.1 | ||||||||
Common Name | LOC4340385, Os06g0194400, P0648E08.15, P0698A06.41 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | B3 | ||||||||
Protein Properties | Length: 238aa MW: 27559 Da PI: 9.525 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 53.7 | 3.7e-17 | 139 | 229 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k +++s+v+ +l+lp +f +++ + +++ t++l de+ +++ + ++++ l++GW++F a++L +gD +vF+l++r++f + LOC_Os06g09420.1 139 FVKPMLQSHVTGGFWLSLPTHFSRKYL-P-KRDETIRLVDEEDDEFDTLY--LANKRG--LSGGWRGFSIAHKLVDGDCLVFQLIQRTKF--K 223 89************************5.3.35669***************..555555..9************************99999..9 PP EEEE-S CS B3 94 vkvfrk 99 v ++r+ LOC_Os06g09420.1 224 VYIIRA 229 999886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.12E-24 | 132 | 230 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.3E-20 | 133 | 230 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.76E-27 | 137 | 228 | No hit | No description |
SMART | SM01019 | 2.3E-19 | 139 | 230 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.899 | 139 | 230 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.6E-15 | 139 | 229 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009049 | anatomy | inflorescence | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MIEAESQMAE AASYEEQRRR QVEANKRKLE ELRLHHLSAA VRESASKPSP VKQRKRKARA 60 LPGAGEDAPL RRSGRVANLP EKPKYRDEFQ DFEKRIRRSY GGKRRDLSNR VYATDEQRDY 120 AINAAQELEE ELGSDYPIFV KPMLQSHVTG GFWLSLPTHF SRKYLPKRDE TIRLVDEEDD 180 EFDTLYLANK RGLSGGWRGF SIAHKLVDGD CLVFQLIQRT KFKVYIIRAS SYYETDD* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.49655 | 0.0 | callus| panicle| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32988189 | 0.0 | ||||
Expression Atlas | Q69V36 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os06g09420.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os06g09420 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK102980 | 0.0 | AK102980.1 Oryza sativa Japonica Group cDNA clone:J033115O10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015642147.1 | 1e-175 | B3 domain-containing protein Os06g0194400 | ||||
Swissprot | Q69V36 | 1e-176 | Y6944_ORYSJ; B3 domain-containing protein Os06g0194400 | ||||
TrEMBL | A0A0E0HM37 | 1e-173 | A0A0E0HM37_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0PUL9 | 1e-173 | A0A0E0PUL9_ORYRU; Uncharacterized protein | ||||
STRING | OS06T0194400-01 | 1e-174 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1756 | 38 | 103 | Representative plant | OGRP995 | 16 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 7e-63 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os06g09420.1 |
Entrez Gene | 4340385 |
Publications ? help Back to Top | |||
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