PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g09370.3
Common NameLOC4340382, P0698A06.26-2
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 402aa    MW: 42795.1 Da    PI: 5.6237
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g09370.3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.53.8e-11250295555
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h+++Er RR++i +++ +L+ l+P++      K +Ka++L + ++Y+k Lq
  LOC_Os06g09370.3 250 HSIAERLRREKISERMKNLQVLVPNS-----NKADKASMLDEIIDYVKFLQ 295
                       99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.17E-12243299No hitNo description
SuperFamilySSF474591.83E-16243305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.666245294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.2E-16247304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-8250295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.1E-13251300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MDYSAGSYMW PGNSGSENYN FVDGSSESYA EEGSLPPSGY FMGAGSDRSL KITENERNPT  60
MLANGCLPYN TQAHPLSGQI LPKAPTLCSA FQNVSSFMEP VNLDAFGFQG AQNVAMLNKT  120
SLPNGNPSLF DNAAIASLHD SKEFLNGGSI PSFGTVLQAL GAGGLKAAQQ EQNIRNIPLP  180
TFTSGSHLAV TDAQGPPLPS KIPPLIHDHN SEYPINHSSD VEPQANSAPG NSANAKPRTR  240
ARRGQATDPH SIAERLRREK ISERMKNLQV LVPNSNKADK ASMLDEIIDY VKFLQLQVKV  300
LSMSRLGAPG AVLPLLRESQ TECHSNPSLS ASTISQGPPD MPDSEDSSAF EQEVVKLMET  360
SIISAMQYLQ NKGLCLMPIA LASAISNQKG MAAAAAIPPE K*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.87900.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329756850.0
Expression AtlasQ69Y51-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g09370.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g09370
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0621270.0AK062127.1 Oryza sativa Japonica Group cDNA clone:001-045-D10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644035.10.0transcription factor bHLH82 isoform X2
TrEMBLQ69Y510.0Q69Y51_ORYSJ; Putative bHLH transcription factor PTF1
STRINGOS06T0193400-010.0(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.17e-57LJRHL1-like 3