PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g08340.1
Common NameOSJNBb0019L07.25
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 179aa    MW: 19168.3 Da    PI: 6.0005
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g08340.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.29.9e-19756255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                      +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++ + g
  LOC_Os06g08340.1  7 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAARIMCG 56
                      69******9.**********8.....334**********************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.27E-31666No hitNo description
SuperFamilySSF541719.81E-21766IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-33765IPR001471AP2/ERF domain
PfamPF008472.8E-11755IPR001471AP2/ERF domain
PROSITE profilePS5103220.692764IPR001471AP2/ERF domain
SMARTSM003801.4E-38770IPR001471AP2/ERF domain
PRINTSPR003672.8E-11819IPR001471AP2/ERF domain
PRINTSPR003672.8E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MARPQQRYRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA EDAARAYDEA ARIMCGPRVR  60
TNFPHDVADE AAPPPPPHSA AAASSSFLSA ALVAKLHRFN LASVQAAQRG NSNDDDSTTS  120
SSAAASSRAV IPSLPAAAGA LGNAAATAEW SGGFLEEQYV DQMIEELLDS NFSMEISC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-16667466ATERF1
3gcc_A3e-16667466ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.879730.0callus
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329935640.0
Expression AtlasQ5SMI3-
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g08340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g08340
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1083550.0AK108355.1 Oryza sativa Japonica Group cDNA clone:002-142-C04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641438.21e-128ethylene-responsive transcription factor ERF003
SwissprotQ94AW54e-52ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A0E0A5W21e-127A0A0E0A5W2_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0PUA41e-127A0A0E0PUA4_ORYRU; Uncharacterized protein
TrEMBLQ5SMI31e-127Q5SMI3_ORYSJ; Putative ethylene response factor 1
STRINGOGLUM06G05450.11e-128(Oryza glumipatula)
STRINGORUFI06G05350.11e-128(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141835118
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.12e-30ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]