PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g08290.1
Common NameAID1, LOC4340310, Os06g0181300, OSJNBa0035I03.37, OSJNBb0019L07.19
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB_related
Protein Properties Length: 427aa    MW: 45232.1 Da    PI: 5.8133
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g08290.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding301.2e-09377424347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                       +W + E+e l ++v+q+G+g+Wk I    +    gR + ++k++w++ 
  LOC_Os06g08290.1 377 KWCALEEETLRKGVEQYGNGNWKDILTNNPdvfIGRKAMDLKDKWRNM 424
                       68888****************************99***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.122370426IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.4E-12370426IPR009057Homeodomain-like
SuperFamilySSF466895.15E-13372425IPR009057Homeodomain-like
CDDcd116601.68E-16376426No hitNo description
PfamPF002491.4E-7377424IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0031627Biological Processtelomeric loop formation
GO:0043067Biological Processregulation of programmed cell death
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009009anatomyplant embryo
PO:0001081developmental stagemature plant embryo stage
PO:0007042developmental stagewhole plant fruit formation stage
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MPRLMPEDAS LLLDHVVGDP SVPAAAANAA LAALPFPSRP TPRLLRASLL RRLAADPVSA  60
AALDSLQLLA SLPSSPSPAA PAAAAAAAAH LAVAAYLAVS APDFDAAAGA LFGRPGGRAR  120
RAVEEGGAAA LASDEADAVA DQFEAAVGNS FSQTVLRGLW GDRAAAEERV RELLAVEWAA  180
IGQSRLEMAA ERIVGDGAIE TWRAADEVTR AKYRLLAGEQ RAREIEGKLG ETIPQGNQIS  240
TPEVHKVMDA LKSSCANLHS VVEDPLPAAK AAADEVLAAR MDKAVDLNAG EVSNQPTACD  300
IAGPSAPADN LDAPRKGTAA SLMDWNPTAR TFQWEDSPDP DGSRSPIHRP QLPSPRRTTF  360
SPLQPADNKA KRRKARKWCA LEEETLRKGV EQYGNGNWKD ILTNNPDVFI GRKAMDLKDK  420
WRNMMR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.163890.0callus| leaf| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO403884180.0
Expression AtlasQ6T804-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g08290.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g08290
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY4290170.0AY429017.1 Oryza sativa (japonica cultivar-group) ANTHER INDEHISCENCE1 (AID1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641699.10.0uncharacterized protein LOC4340310
TrEMBLQ6T8040.0Q6T804_ORYSJ; ANTHER INDEHISCENCE1
STRINGONIVA06G06040.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31543040
Representative plantOGRP15031424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.11e-11TRF-like 5
Publications ? help Back to Top
  1. Zhu QH,Ramm K,Shivakkumar R,Dennis ES,Upadhyaya NM
    The ANTHER INDEHISCENCE1 gene encoding a single MYB domain protein is involved in anther development in rice.
    Plant Physiol., 2004. 135(3): p. 1514-25
    [PMID:15247409]