PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os06g07030.1 | ||||||||
Common Name | LOC4340244, Os06g0166400, OSJNBa0015I14.36, OSNPB_060166400, P0680A03.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ERF | ||||||||
Protein Properties | Length: 185aa MW: 19678.1 Da PI: 11.1922 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.7 | 5e-17 | 44 | 93 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr +k +g+WvAeIr+p +kr r++lg++ ta Aa+a++ a +l+g LOC_Os06g07030.1 44 QYRGVRMRK-WGKWVAEIREP---NKRSRIWLGSYSTAVAAARAYDTAVFYLRG 93 69*****99.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 3.8E-31 | 43 | 102 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-22 | 44 | 103 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.972 | 44 | 101 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.4E-10 | 44 | 93 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.8E-37 | 44 | 107 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.9E-12 | 45 | 56 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.99E-22 | 50 | 103 | No hit | No description |
PRINTS | PR00367 | 4.9E-12 | 83 | 103 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MDRREATVFL PPPPPPQPTQ PQQQPAAAAV RAPVGGRGGG GGRQYRGVRM RKWGKWVAEI 60 REPNKRSRIW LGSYSTAVAA ARAYDTAVFY LRGRSARLNF PDQLDGAGGG GAGAGGAEDH 120 RELTAAVIRK KAAEVGARVD AQHSVVGAAA PVPLQPPQPP PPQRRRTKNP DLNREPTPDT 180 SDDE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-16 | 35 | 109 | 4 | 80 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 34 | 41 | GGRGGGGG |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.38447 | 0.0 | callus| flower| panicle| root| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32992984 | 0.0 | ||||
Expression Atlas | Q5VRR2 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os06g07030.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os06g07030 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB023482 | 0.0 | AB023482.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, clone P0680A03. | |||
GenBank | AP002536 | 0.0 | AP002536.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0015I14. | |||
GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641200.1 | 1e-127 | ethylene-responsive transcription factor RAP2-9 | ||||
Swissprot | O22174 | 4e-42 | ERF08_ARATH; Ethylene-responsive transcription factor ERF008 | ||||
TrEMBL | Q5VRR2 | 1e-126 | Q5VRR2_ORYSJ; Os06g0166400 protein | ||||
STRING | OS06T0166400-01 | 1e-127 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3943 | 30 | 75 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36900.1 | 1e-26 | related to AP2 10 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os06g07030.1 |
Entrez Gene | 4340244 |
Publications ? help Back to Top | |||
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