PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os06g07010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | FAR1 | ||||||||
Protein Properties | Length: 782aa MW: 88649.4 Da PI: 7.3517 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 71.1 | 2.6e-22 | 54 | 140 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y++Y++++GFsvrk k+++ +++i +++++Cskeg + +e + +++ +r+ trt+Cka+++ + +++g+w v++++ HnH+la LOC_Os06g07010.1 54 LYCDYGHRIGFSVRKGKQSYFIGTKNIRTKDYYCSKEGLKYDEPVT--EANFNRPDTRTNCKAMIRFRVDEKGRWTVIRFVPTHNHQLA 140 7********************9*******************99988..9999***********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.6E-20 | 54 | 140 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 4.2E-31 | 262 | 355 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.186 | 543 | 579 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 4.2E-6 | 544 | 576 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 6.0E-6 | 554 | 581 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 782 aa Download sequence Send to blast |
MDSSRDSEEE RPQRKDNGEE TENGEDGGNA LSLKDVANEL LGCVVHSEEE AYKLYCDYGH 60 RIGFSVRKGK QSYFIGTKNI RTKDYYCSKE GLKYDEPVTE ANFNRPDTRT NCKAMIRFRV 120 DEKGRWTVIR FVPTHNHQLA KPGERHMLRS AKSLAVGKSG VIDPQASTES HPINGFSHMI 180 GSDIVEPPGY TIRDCYNHVS MQGITIIEAG DSQSLVNYFK RRTNEEGMFY WDVQVDQEGR 240 MTNFFFRDAK SRNDFDCFGD AVIFDTTFRT NKYSLVCAPF VGVNHHWQNI VFGCAFLLDE 300 SSASYVWLFK SFLESMGGRS PKSIFTDQDD AITQAVELVF PNTQHCFSYW HILKNAQSHL 360 GTVNTSQTFQ NMFIKCMQGP NSETELEESW ATMLNEYKLQ ENSWLSDLYR SRNKWCSAFN 420 KDTFDGGINS SQWGEVSNNT FTGISDESTP LTRFALLLEK VFKGLRRNES EEDFRCSQTA 480 PVRAIKHSTV LKQAAESYTH KIYKLFEAEF LDGCGATSCH ESSCGGNLLR FEITMQGRGS 540 KVWTVLLDTS TMEISCGCRK FERMGLLCSH ALKAFSLQNV DTIPEKYISK RWTKDARRSM 600 YKLSQDDSTQ QECTEAELAY RNRATQYACS LIAKSQELDE SRKIFWDTLE TGEKALDVFF 660 EIRSLRSQAA KDVSKRDKKK KKSSKGPSTK KAKPTPATSS AVPELLAQTN VHQFQSAQDA 720 QGNTTIGRPL YYQAFSSAPI QPNQIYMHPN MHTMPLCAPQ QDFSAYSAMR PNSNFGGAKN 780 V* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.25299 | 0.0 | flower| leaf| panicle| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32976192 | 0.0 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os06g07010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os06g07010 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK066174 | 0.0 | AK066174.1 Oryza sativa Japonica Group cDNA clone:J013056I21, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015643627.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 isoform X1 | ||||
TrEMBL | I1PZU5 | 0.0 | I1PZU5_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA06G0040800.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 | Representative plant | OGRP30 | 12 | 351 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-103 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os06g07010.1 |