PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g06900.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 314aa    MW: 34138.1 Da    PI: 6.1326
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g06900.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.12.5e-16107153455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        hn  E+rRR++iN+++  L++l+P++      K +Ka++L +A+eY+k+Lq
  LOC_Os06g06900.1 107 VHNLSEKRRRSKINEKMKALQSLIPNS-----NKTDKASMLDEAIEYLKQLQ 153
                       6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.75E-1899157No hitNo description
SuperFamilySSF474591.31E-20100163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-20100163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.076103152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.9E-14107153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-18109158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009409Biological Processresponse to cold
GO:0010114Biological Processresponse to red light
GO:0010154Biological Processfruit development
GO:0010187Biological Processnegative regulation of seed germination
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MDEQRGRGGF DELVLLHQQQ EQRRRREQQQ EEEEEEEVRR QMFGAVVGGL AAFPAAAAAL  60
GQQQVDCGGE LGGFCDSEAG GSSEPEAAAG ARPRGGSGSK RSRAAEVHNL SEKRRRSKIN  120
EKMKALQSLI PNSNKTDKAS MLDEAIEYLK QLQLQVQMLS MRNGVYLNPS YLSGALEPAQ  180
ASQMFAALGG NNVTVVHPGT VMPPVNQSSG AHHLFDPLNS PPQNQPQSLI LPSVPSTAIP  240
EPPFHLESSQ SHLRQFQLPG SSEMVFHGEI MPKHHLSSHQ ESLPGNEMNS IRKESSMLNT  300
NNFDGVSLSK EQS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.984230.0flower| panicle
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00035PBMTransfer from AT4G36930Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g06900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g06900
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2434470.0AK243447.1 Oryza sativa Japonica Group cDNA, clone: J100069B16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881998.10.0LOW QUALITY PROTEIN: transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15-like
TrEMBLI1PZT60.0I1PZT6_ORYGL; Uncharacterized protein
STRINGORGLA06G0039900.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33363776
Representative plantOGRP25816128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.11e-34bHLH family protein