PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g06540.1
Common NameLOC107277520, P0681F10.9
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 343aa    MW: 36458.5 Da    PI: 4.6277
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g06540.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22.1e-18120170256
               AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 
                       +++GVr ++ +g++ AeIr+      +++r++lg+f+taeeAa+ +++a+++l+g+
  LOC_Os06g06540.1 120 KFRGVRKRP-WGKYGAEIRV----SqQSARVWLGTFDTAEEAARVYDHAALRLRGP 170
                       89*******.**********....3245**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.9E-29119178IPR001471AP2/ERF domain
SMARTSM003801.1E-34120183IPR001471AP2/ERF domain
PROSITE profilePS5103222.168120177IPR001471AP2/ERF domain
CDDcd000182.54E-29120177No hitNo description
SuperFamilySSF541713.73E-20120178IPR016177DNA-binding domain
PfamPF008473.7E-11120169IPR001471AP2/ERF domain
PRINTSPR003672.1E-10121132IPR001471AP2/ERF domain
PRINTSPR003672.1E-10143159IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MVEVIVEKKA RRIVRGRWHV EASNEAAAAA PAVAAPAPRV VRVLCRDHDA TDSSGDDDGE  60
DDAPRRARLL VHEIHVARQP VAMSPAAASS SQRRRVGPMK RTESAVDATM DATAAAPERK  120
FRGVRKRPWG KYGAEIRVSQ QSARVWLGTF DTAEEAARVY DHAALRLRGP SATTNFPMTP  180
AAPSPPPSRA TYAGAASGYD ESSDESQLVG SPVSVLRPMP ARATAKKEAK EEDDSAPDIL  240
GISAGDGLIS PFTCDVLNFP PPDEDMFGGG ISFGEPTPPP MVFDDDCMAR LGHAPNDDEH  300
PVTSSSFLDG DLGDLPSWTE VDGFFSDVGG DDLFAAEPFP AL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-20115177972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ5WA92
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g06540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g06540
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0262950.0AB026295.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, clone:P0681F10.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642210.20.0ethylene-responsive transcription factor 11
TrEMBLA0A0E0PTU60.0A0A0E0PTU6_ORYRU; Uncharacterized protein
TrEMBLA2Y9M20.0A2Y9M2_ORYSI; Putative TSI1
TrEMBLQ5WA920.0Q5WA92_ORYSJ; Putative TSI1
STRINGORUFI06G04020.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131332332
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.28e-25cytokinin response factor 2