PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os06g06360.1 | ||||||||
Common Name | LOC4340188, Os06g0158100, OSNPB_060158100, P0046E09.34, P0702F05.14 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | WRKY | ||||||||
Protein Properties | Length: 392aa MW: 41403.5 Da PI: 6.1909 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 89.4 | 3.1e-28 | 144 | 204 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dDg++WrKYGqK++ g++fpr+YYrCt++ gCp++k+v+rs+ d v+++tY+g H+++ LOC_Os06g06360.1 144 DDGFSWRKYGQKDILGAKFPRGYYRCTYRnaqGCPATKQVQRSDADLAVFDVTYQGAHTCH 204 8***************************98889**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.8E-28 | 132 | 205 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 22.768 | 138 | 201 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.24E-24 | 142 | 205 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.1E-41 | 143 | 205 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.8E-27 | 144 | 204 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
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Protein Sequence Length: 392 aa Download sequence Send to blast |
MDGGDIHLLL SILADGEEQA RQLGEPAAAA DDEYHGGGRG EEYYRGVARQ LQGTLARAMG 60 IARAIEAAAF AGGGGGGGAS GSRGTTGDRS DSPRSADESS GRTARDAAVA QQERHHDTIK 120 RRKGLPRWTE KFRVPDASLE ATPDDGFSWR KYGQKDILGA KFPRGYYRCT YRNAQGCPAT 180 KQVQRSDADL AVFDVTYQGA HTCHQKQRRA AAAGDQPPPP PPQADPSVEL LVNFRHGLKV 240 ETNGLAPPPP PPPTTTTNFH DDQHFCFPSM PPFHAGVGPP PPPDDALGGG CNNFSSPPFV 300 SPAGSAAGES YFSMEHSYEP RGGGGHFVMS RGDSSELHEV VSAAASSSAV VDPAAAAGGF 360 DYPLYHGEVD PHLPFPPLFG HASMYGQYRD A* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 9e-19 | 145 | 201 | 18 | 74 | Disease resistance protein RRS1 |
5w3x_D | 9e-19 | 145 | 201 | 18 | 74 | Disease resistance protein RRS1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.57696 | 0.0 | flower| seed |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 116011284 | 0.0 | ||||
Expression Atlas | Q5VMX9 | - |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os06g06360.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os06g06360 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK241919 | 0.0 | AK241919.1 Oryza sativa Japonica Group cDNA, clone: J075074E04, full insert sequence. | |||
GenBank | AK287985 | 0.0 | AK287985.1 Oryza sativa Japonica Group cDNA, clone: J075093G10, full insert sequence. | |||
GenBank | AY676932 | 0.0 | AY676932.1 Oryza sativa (indica cultivar-group) transcription factor WRKY100 (WRKY100) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015643057.1 | 0.0 | probable WRKY transcription factor 30 | ||||
TrEMBL | Q5VMX9 | 0.0 | Q5VMX9_ORYSJ; Os06g0158100 protein | ||||
TrEMBL | Q6B6Q7 | 0.0 | Q6B6Q7_ORYSI; Putative WRKY74-b transcription factor | ||||
STRING | OS06T0158100-00 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13340 | 27 | 30 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23810.1 | 9e-38 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os06g06360.1 |
Entrez Gene | 4340188 |
Publications ? help Back to Top | |||
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