PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g05380.1
Common NameLOC107276380, Os06g0146250, OSNPB_060146250
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 528aa    MW: 54707 Da    PI: 8.3723
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g05380.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.61.7e-30178237159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+a+d +++++tYeg+Hnh+
  LOC_Os06g05380.1 178 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVAaGCPVRKQVQRCADDMSILITTYEGTHNHP 237
                       58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.9E-32163237IPR003657WRKY domain
SuperFamilySSF1182902.48E-27171238IPR003657WRKY domain
PROSITE profilePS5081128.311173239IPR003657WRKY domain
SMARTSM007743.4E-37178238IPR003657WRKY domain
PfamPF031062.4E-27179237IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MGEVREENER LKTLLSRISH DYRSLQTHFY DVLQQGRAKK LPDSPATDIE EPELVSLRLG  60
TSTSKCKKED KSTTSSEVKG STEDFLKIKG GLSLGLSDCR VDANNSEKVQ PDVMTLSPEG  120
SFEDARDDTA ETTEQWPPSK MLKNLRSVGA EAEDDIAPQP QVKKARVSVR ARCDAPTMND  180
GCQWRKYGQK IAKGNPCPRA YYRCTVAAGC PVRKQVQRCA DDMSILITTY EGTHNHPLSV  240
SATAMASTTS AAASMLISGS SSTSLAAYPA AAASPALAFD ASSKPPLIGG RPFFLPTAAA  300
AAITSTPSYP TITLDLTSPA AAATSSHAAF SLSNRFSHTR YPSTGFTFSG SGPSSAPWPG  360
YLSYGASLSA HPYNAGGGKS SSSFEAALSS INGSRQQGGG GGGGSAPPLY QMQQKAAAAA  420
PPPPSVITDT IAKAITADPS FHTALAAAIT SYVGKKGSPP ASGGEDSKVG LKWGEHLGLG  480
LTHSSLSTAA AAAASSSSQM FLQPSLGLSG STTSASTSPV ANREQAH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-201782381776Probable WRKY transcription factor 4
2lex_A3e-201782381776Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasA0A0P0WSW3
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g05380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g05380
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0037670.0AP003767.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0036F10.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643469.10.0probable WRKY transcription factor 72 isoform X2
TrEMBLA0A0P0WSW30.0A0A0P0WSW3_ORYSJ; Os06g0146250 protein
STRINGOS06T0146250-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50473862
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.13e-62WRKY DNA-binding protein 72