PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LOC_Os06g04960.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 342aa MW: 36408.4 Da PI: 8.0506 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.7 | 3.5e-10 | 54 | 91 | 5 | 44 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 T+eEd +++ a++ +G++ + Ia+ + gRt++ +k+++ LOC_Os06g04960.1 54 TEEEDRIIIAAHAIHGNK-RACIAKLLD-GRTDNAIKNHL 91 9*****************.*********.**********8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.291 | 54 | 99 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.85E-7 | 54 | 94 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.4E-6 | 54 | 91 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.50E-7 | 54 | 90 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.8E-11 | 54 | 90 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 342 aa Download sequence Send to blast |
MGEGDAGQES YHAMSKSRPP DQYWMDGQDL CRKPAWKSAT RAKSPPIDFE AHETEEEDRI 60 IIAAHAIHGN KRACIAKLLD GRTDNAIKNH LEFYSEASIL QRWSMQTWLL QGILNPGVQS 120 ASVPPEFKIF RIPLTRNGGG GGGDEAEGNG GGGGGWGAAA TAVGSSGCGL VRTPDGTTKL 180 LIWSTEMLYG TTTTTLLIVA FTSALRVKEE LAGDELHLSV VIVPAIPALG SGCARSSVIH 240 VISTDARERR RFGRMAISSA RLPVEWIPSS ERSPSLVSST ALSSSAFAFA AALHVLPPPL 300 RPSLAVIAIG RTTIYEDAGR RRTLHLHHAA APSPHLTPSL L* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Os.89087 | 0.0 | panicle |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 32992486 | 0.0 |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LOC_Os06g04960.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
RiceGE | Os06g04960 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK107277 | 0.0 | AK107277.1 Oryza sativa Japonica Group cDNA clone:002-126-A07, full insert sequence. | |||
GenBank | AP000399 | 0.0 | AP000399.1 Oryza sativa Japonica Group genomic DNA, chromosome 6, clone:P0535G04. | |||
GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
STRING | ORUFI06G02660.1 | 5e-97 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP20121 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G55730.1 | 3e-14 | myb domain protein 109 |
Link Out ? help Back to Top | |
---|---|
Phytozome | LOC_Os06g04960.1 |