PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g03670.1
Common NameCBF1, DREB1C, ERF26, LOC4339974, Os06g0127100, OsJ_019159, OSJNBa0038F22.13, P0425F02.47
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 215aa    MW: 23110.5 Da    PI: 4.7872
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g03670.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.82.7e-183283155
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      + y+GVr++   grWv+e+r+p   +k+ r++lg+f tae Aa+a++ a+++l+g
  LOC_Os06g03670.1 32 PVYRGVRRRGPAGRWVCEVREP---NKKSRIWLGTFATAEAAARAHDVAALALRG 83
                      68****************9998...347*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.3E-143283IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-303393IPR001471AP2/ERF domain
SMARTSM003802.5E-253397IPR001471AP2/ERF domain
PROSITE profilePS5103222.2343391IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-203393IPR016177DNA-binding domain
CDDcd000189.36E-143493No hitNo description
PRINTSPR003671.1E-53445IPR001471AP2/ERF domain
PRINTSPR003671.1E-55773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009038anatomypalea
PO:0001048developmental stagepalea development stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MEYYEQEEYA TVTSAPPKRP AGRTKFRETR HPVYRGVRRR GPAGRWVCEV REPNKKSRIW  60
LGTFATAEAA ARAHDVAALA LRGRGACLNF ADSARLLRVD PATLATPDDI RRAAIELAES  120
CPHDAAAAAA SSSAAAVEAS AAAAPAMMMQ YQDDMAATPS SYDYAYYGNM DFDQPSYYYD  180
GMGGGGEYQS WQMDGDDDGG AGGYGGGDVT LWSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1331901271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.575170.0panicle| root
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ9LWV3
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g03670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g03670
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0011680.0AP001168.1 Oryza sativa Japonica Group genomic DNA, chromosome 6, clone:P0425F02.
GenBankAP0028380.0AP002838.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0038F22.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankAY3270400.0AY327040.1 Oryza sativa (japonica cultivar-group) transcription factor CBF1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642451.11e-155dehydration-responsive element-binding protein 1C
SwissprotA2Y8S61e-156DRE1C_ORYSI; Dehydration-responsive element-binding protein 1C
SwissprotQ9LWV31e-156DRE1C_ORYSJ; Dehydration-responsive element-binding protein 1C
TrEMBLA0A0E0HK821e-151A0A0E0HK82_ORYNI; Uncharacterized protein
TrEMBLA0A0E0PSW11e-151A0A0E0PSW1_ORYRU; Uncharacterized protein
STRINGOS06T0127100-011e-154(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Representative plantOGRP1274245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25480.18e-32dehydration response element B1A
Publications ? help Back to Top
  1. Dubouzet JG, et al.
    OsDREB genes in rice, Oryza sativa L., encode transcription activators that function in drought-, high-salt- and cold-responsive gene expression.
    Plant J., 2003. 33(4): p. 751-63
    [PMID:12609047]
  2. Skinner JS, et al.
    Structural, functional, and phylogenetic characterization of a large CBF gene family in barley.
    Plant Mol. Biol., 2005. 59(4): p. 533-51
    [PMID:16244905]
  3. Nakano T,Suzuki K,Fujimura T,Shinshi H
    Genome-wide analysis of the ERF gene family in Arabidopsis and rice.
    Plant Physiol., 2006. 140(2): p. 411-32
    [PMID:16407444]
  4. Kim SJ, et al.
    Ectopic expression of a cold-responsive OsAsr1 cDNA gives enhanced cold tolerance in transgenic rice plants.
    Mol. Cells, 2009. 27(4): p. 449-58
    [PMID:19390826]
  5. Kim MJ, et al.
    Quadruple 9-mer-based protein binding microarray with DsRed fusion protein.
    BMC Mol. Biol., 2009. 10: p. 91
    [PMID:19761621]
  6. Kim MJ, et al.
    Convenient determination of protein-binding DNA sequences using quadruple 9-mer-based microarray and DsRed-monomer fusion protein.
    Methods Mol. Biol., 2012. 786: p. 65-77
    [PMID:21938620]
  7. Min HJ,Jung YJ,Kang BG,Kim WT
    CaPUB1, a Hot Pepper U-box E3 Ubiquitin Ligase, Confers Enhanced Cold Stress Tolerance and Decreased Drought Stress Tolerance in Transgenic Rice (Oryza sativa L.).
    Mol. Cells, 2016. 39(3): p. 250-7
    [PMID:26674966]
  8. Dou M,Cheng S,Zhao B,Xuan Y,Shao M
    The Indeterminate Domain Protein ROC1 Regulates Chilling Tolerance via Activation of DREB1B/CBF1 in Rice.
    Int J Mol Sci, 2016. 17(3): p. 233
    [PMID:26927068]