PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os06g02230.1 | ||||||||
Common Name | LOC4339899, Os06g0112300, OsJ_19871, P0029D06.25 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | B3 | ||||||||
Protein Properties | Length: 176aa MW: 18876.7 Da PI: 5.2481 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 52.4 | 9.5e-17 | 60 | 152 | 5 | 98 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-..SS.SEE..EE CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld..gr.sefelvv 94 +s+ + + ++++p +f h + ++e +t + ++ g+sW + +++ ++ l +GW+eF+ +n+L +gD +vF+l+ g + e+ v LOC_Os06g02230.1 60 IAKSHLHPKFQMWIPPRFQ--HRLAEPEARTAAVLHSGGKSWATSY--CGHLKMKKLDAGWSEFAVDNRLLVGDACVFELVamGAaGGLEFQV 148 34566667799*******6..6666778889***************..*******************************76446667777777 PP EEE- CS B3 95 kvfr 98 +++r LOC_Os06g02230.1 149 QILR 152 7766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.6E-19 | 51 | 152 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.34E-18 | 52 | 152 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.03E-15 | 54 | 152 | No hit | No description |
PROSITE profile | PS50863 | 12.957 | 56 | 154 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0022 | 56 | 154 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.9E-15 | 59 | 152 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009072 | anatomy | plant ovary | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MELDTDPTKL KAKPIIKPKV EPCDDDDELP PPPPPASGSG EDWEATTPLA AGNPFFTALI 60 AKSHLHPKFQ MWIPPRFQHR LAEPEARTAA VLHSGGKSWA TSYCGHLKMK KLDAGWSEFA 120 VDNRLLVGDA CVFELVAMGA AGGLEFQVQI LRGGLPAEVV TSKGLTSDQP ILIVD* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.20309 | 0.0 | panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32992129 | 0.0 | ||||
Expression Atlas | Q9LHY9 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os06g02230.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os06g02230 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK106920 | 0.0 | AK106920.1 Oryza sativa Japonica Group cDNA clone:002-119-B04, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015643738.1 | 1e-126 | B3 domain-containing protein Os06g0112300 | ||||
Refseq | XP_015643739.1 | 1e-126 | B3 domain-containing protein Os06g0112300 | ||||
Refseq | XP_025882046.1 | 1e-126 | B3 domain-containing protein Os06g0112300 | ||||
Swissprot | Q9LHY9 | 1e-127 | Y6112_ORYSJ; B3 domain-containing protein Os06g0112300 | ||||
TrEMBL | A0A0E0PSL0 | 1e-123 | A0A0E0PSL0_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI06G00790.1 | 1e-124 | (Oryza rufipogon) | ||||
STRING | OS06T0112300-01 | 1e-125 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12046 | 19 | 33 | Representative plant | OGRP7665 | 9 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58280.1 | 2e-07 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os06g02230.1 |
Entrez Gene | 4339899 |
Publications ? help Back to Top | |||
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