PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g01480.1
Common NameLOC4339853, Os06g0104200, OsJ_19820, OSJNBa0075G19.40, OSNPB_060104200
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 365aa    MW: 41570.2 Da    PI: 6.8291
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g01480.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM175.71.3e-54171531129
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.......kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                       +ppGfrFhPtdeelv++yL+kkv++++++l +vik+vd+yk+ePwdL++       ++++e++ewyfFs++dkky+tg+r+nrat++g+Wkat
  LOC_Os06g01480.1  17 VPPGFRFHPTDEELVDYYLRKKVAARRIDL-NVIKDVDLYKIEPWDLQErcringgSAAEEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKAT 108
                       69****************************.99**************9557777664455778****************************** PP

               NAM  87 gkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrle 129
                       g+dk+++++  ++ lvg++ktLv+y+grap+g+k+dW+mheyrle
  LOC_Os06g01480.1 109 GRDKPIYATkqHSLLVGMRKTLVYYRGRAPNGHKSDWIMHEYRLE 153
                       *******98434445****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.45E-607173IPR003441NAC domain
PROSITE profilePS5100559.53117173IPR003441NAC domain
PfamPF023652.2E-2818152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009037anatomylemma
PO:0001047developmental stagelemma development stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MDGSSMSSSS TQQQAQVPPG FRFHPTDEEL VDYYLRKKVA ARRIDLNVIK DVDLYKIEPW  60
DLQERCRING GSAAEEQNEW YFFSHKDKKY PTGTRTNRAT AAGFWKATGR DKPIYATKQH  120
SLLVGMRKTL VYYRGRAPNG HKSDWIMHEY RLETTETAPP QEEGWVVCRV FKKRLPTTRR  180
DSDHDAPCGS WYVDEDAPGA FMSPMMITRS SILRPHQHHA GITLQEQHLH TTYKHRDLTT  240
KIQQLQVPAA GHHLLNTMPH DLESSTSSFH SLLVSPDHHQ INMHHAQADP FFDDMHAVDQ  300
ATTTDWRVLD KFVASQLSND ATNKPADHYT DEGDILQVSD KQQEVAAADY ASTSTSSSQI  360
DPWK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-49111749169Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.528150.0flower
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329794470.0
Expression AtlasQ8H624-
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Up-regulated during xylem vessel element formation. Expressed preferentially in procambial cells adjacent to root meristem. {ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
UniprotTISSUE SPECIFICITY: Detected in root vessels of protoxylems, outermost metaxylems, inner metaxylems, shoots and hypocotyls. Expressed in roots, hypocotyls, cotyledons and leaves (PubMed:18445131). Expressed in developing xylems (PubMed:16103214, PubMed:17565617). Specifically expressed in vessels in the secondary xylem of the root-hypocotyl region, and in vessels but not in interfascicular fibers in stems (PubMed:25148240). {ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:17565617, ECO:0000269|PubMed:18445131, ECO:0000269|PubMed:25148240}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g01480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g01480
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN6340760.0JN634076.1 Oryza sativa Japonica Group secondary wall NAC transcription factor 7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642963.10.0NAC domain-containing protein 105
RefseqXP_015642964.10.0NAC domain-containing protein 105
SwissprotF4HYV51e-103NAC26_ARATH; NAC domain-containing protein 26
TrEMBLA0A0E0HJM10.0A0A0E0HJM1_ORYNI; Uncharacterized protein
TrEMBLA0A0E0PSE20.0A0A0E0PSE2_ORYRU; Uncharacterized protein
TrEMBLA2Y8A70.0A2Y8A7_ORYSI; Uncharacterized protein
TrEMBLI1PYR10.0I1PYR1_ORYGL; Uncharacterized protein
TrEMBLQ8H6240.0Q8H624_ORYSJ; Os06g0104200 protein
STRINGORUFI06G00250.10.0(Oryza rufipogon)
STRINGOS06T0104200-010.0(Oryza sativa)
STRINGONIVA06G00260.10.0(Oryza nivara)
STRINGORGLA06G0002300.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121023039
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62700.14e-91Arabidopsis NAC domain containing protein 26
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Zhong R, et al.
    Transcriptional activation of secondary wall biosynthesis by rice and maize NAC and MYB transcription factors.
    Plant Cell Physiol., 2011. 52(10): p. 1856-71
    [PMID:21908441]