PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LOC_Os06g01230.2 | ||||||||
Common Name | Os06g0101800, OSNPB_060101800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 360aa MW: 40216.1 Da PI: 7.2549 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 155.2 | 2.8e-48 | 18 | 148 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lp+GfrF+Ptdeelv +yLk k++g++++ i++vd+ ++ePwdLp + +k+++ ew+fF++rd+ky+ g+r+nr+t++gyWkatgkd+ LOC_Os06g01230.2 18 LPVGFRFRPTDEELVRHYLKGKIAGRSHPDLLLIPDVDLSTCEPWDLPaMsVIKSDDPEWFFFAPRDRKYPGGHRSNRSTAAGYWKATGKDRL 110 79*************************999889***************5347777888*********************************** PP NAM 92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + s+ g l+g+kktLvf++grap+g +t W+mheyr LOC_Os06g01230.2 111 IRSRpAGPLIGIKKTLVFHRGRAPRGLRTAWIMHEYRT 148 ***988889***************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.06E-56 | 8 | 169 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.138 | 18 | 169 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.3E-26 | 19 | 147 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0009047 | anatomy | stem | ||||
PO:0007010 | developmental stage | whole plant fruit ripening stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 360 aa Download sequence Send to blast |
MKQGKVEMTP AVAAAAVLPV GFRFRPTDEE LVRHYLKGKI AGRSHPDLLL IPDVDLSTCE 60 PWDLPAMSVI KSDDPEWFFF APRDRKYPGG HRSNRSTAAG YWKATGKDRL IRSRPAGPLI 120 GIKKTLVFHR GRAPRGLRTA WIMHEYRTTE PHFQSGKNGS FVLYRLFNKH EQDDTHTPAS 180 NLDQQLSTSS QGNPQNGTPA VQPALASIMK DHQTLPSSGF SQLTEIQDAS TSVHDKEQTV 240 AHDDAFLDVL SQLPDLEPEQ RYNGFPNITS PIRPYSDHPF VGNLGEQDLS AHFGSTLSEQ 300 DLQSLLFSPN YTKMDKHPTG NVESNPTASS NNPNNNTLLM DSWRKNDSYQ MLLIQVRIF* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-43 | 18 | 170 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-43 | 18 | 170 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-43 | 18 | 170 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-43 | 18 | 170 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-43 | 18 | 170 | 20 | 169 | NAC domain-containing protein 19 |
3swm_B | 1e-43 | 18 | 170 | 20 | 169 | NAC domain-containing protein 19 |
3swm_C | 1e-43 | 18 | 170 | 20 | 169 | NAC domain-containing protein 19 |
3swm_D | 1e-43 | 18 | 170 | 20 | 169 | NAC domain-containing protein 19 |
3swp_A | 1e-43 | 18 | 170 | 20 | 169 | NAC domain-containing protein 19 |
3swp_B | 1e-43 | 18 | 170 | 20 | 169 | NAC domain-containing protein 19 |
3swp_C | 1e-43 | 18 | 170 | 20 | 169 | NAC domain-containing protein 19 |
3swp_D | 1e-43 | 18 | 170 | 20 | 169 | NAC domain-containing protein 19 |
4dul_A | 1e-43 | 18 | 170 | 17 | 166 | NAC domain-containing protein 19 |
4dul_B | 1e-43 | 18 | 170 | 17 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Os.89249 | 0.0 | callus| flower| leaf| panicle |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 32974196 | 0.0 | ||||
Expression Atlas | Q0DFC8 | - |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Induced during normal senescence. {ECO:0000269|PubMed:18443413}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers (PubMed:17158162). Expressed in guard cells (PubMed:18443413). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:18443413}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:18443413, PubMed:24329768). Calmodulin-regulated transcriptional repressor. Binds several synthetic promoters with randomly selected binding sites (PubMed:17947243). Functions synergistically with SNI1 as negative regulator of pathogen-induced PR1 expression and basal resistance to a virulent strain of P.syringae. Binds directly to the promoter of the PR1 gene (PubMed:22826500). Acts as positive regulator of innate immunity. Involved in the effector-triggered immunity (ETI) induction of immunity-related gene expression (PubMed:24329768). Mediates osmotic stress signaling in leaf senescence by up-regulating senescence-associated genes (PubMed:18443413). {ECO:0000269|PubMed:17947243, ECO:0000269|PubMed:18443413, ECO:0000269|PubMed:22826500, ECO:0000269|PubMed:24329768}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LOC_Os06g01230.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
RiceGE | Os06g01230 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK064178 | 0.0 | AK064178.1 Oryza sativa Japonica Group cDNA clone:002-104-B01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015642953.1 | 0.0 | NAC domain-containing protein 7 | ||||
Swissprot | F4JN35 | 6e-66 | NTL9_ARATH; Protein NTM1-like 9 | ||||
TrEMBL | Q0DFC8 | 0.0 | Q0DFC8_ORYSJ; Os06g0101800 protein | ||||
STRING | OS06T0101800-01 | 0.0 | (Oryza sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G35580.1 | 8e-68 | NAC transcription factor-like 9 |
Link Out ? help Back to Top | |
---|---|
Phytozome | LOC_Os06g01230.2 |
Publications ? help Back to Top | |||
---|---|---|---|
|